| MirGeneDB ID | Cja-Mir-362-P5 |
|---|---|
| Family name | MIR-362 (all species) |
| Seed | AUGCACC |
| Species | White-tufted-ear marmoset (Callithrix jacchus) |
| MiRBase ID | |
| Paralogues | Cja-Mir-362-P3a-v1 Cja-Mir-362-P3a-v2 Cja-Mir-362-P4 |
| Orthologues | Cpo-Mir-362-P5 Eca-Mir-362-P5 Hsa-Mir-362-P5 Mml-Mir-362-P5 Mmr-Mir-362-P5 Mmu-Mir-362-P5 Ocu-Mir-362-P5 Pab-Mir-362-P5 Rno-Mir-362-P5 |
| Node of Origin (locus) | Eutheria |
| Node of Origin (family) | Eutheria |
| Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021937.1: 48751289-48751347 [+] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | CCUGAGCCUUCUGCUUUGCUCUUUCUCUCCAAUCCUUUGUCCCUGGGUAAGAGUGCUUUCUGAAUGCCAUGCACCCAGGGAAGGAUUCGGCAAGGGGGAGUGUCAUCUUCCCAUAGGACGet precursor sequence |
| Structure | 10 20 30 40 50 CCUGAGCCUUCUGCUUU- UU CU -| UUG AAGA- GCUUU GCUCU CU CC AAUCCU UCCCUGGGU GU \ UGAGG GA GG UUAGGA AGGGACCCA CG C CAGGAUACCCUUCUACUG GG AC C^ --- CGUAC UAAGU 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
| Star sequence | Cja-Mir-362-P5_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- AAUCCUUUGUCCCUGGGUAAGAGU -24
Get sequence
|
| Mature sequence | Cja-Mir-362-P5_3p (predicted) |
| mirBase accession | None |
| Sequence |
37- CAUGCACCCAGGGAAGGAUUCG -59
Get sequence
|
