MirGeneDB ID | Cja-Mir-330-v2 |
Family name |
MIR-330 (all species) |
Seed |
CUCUGGG |
Species |
White-tufted-ear marmoset (Callithrix jacchus) |
MiRBase ID |
|
Paralogues |
Cja-Mir-330-v1
|
Orthologues |
Bta-Mir-330-v2
Cfa-Mir-330
Cpo-Mir-330-v2
Dno-Mir-330-v2
Eca-Mir-330-v2
Ete-Mir-330-v2
Hsa-Mir-330-v2
Laf-Mir-330
Mml-Mir-330-v2
Mmr-Mir-330-v2
Mmu-Mir-330-v2
Ocu-Mir-330-v2
Pab-Mir-330-v2
Rno-Mir-330-v2
|
Node of Origin (locus) |
Eutheria
|
Node of Origin (family) |
Eutheria
|
Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021936.1: 38389745-38389808 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CGUGCUGUGUGAUCUUUGGCGAUCACUGCCUCUCUGGGCCUGUGUCUUAGGCUCUGCAAGAUCAACCGAGCAAAGCACACGGCCUGCAGAGAGGCAGCGCUCUGCCCCUUACUCGGCCGCGGUG
Get precursor sequence
|
Structure | 10 20 30 40 50 60
CGUGCUGUGUGAUCUUU- - UCA -- -| U AG CUGCAAG
GGC GA CUGCCUCUCUG GGCC UGUG CUU GCU \
CCG CU GACGGAGAGAC CCGG ACAC GAA CGA A
GUGGCGCCGGCUCAUUCC U CGC GU C^ - A- GCCAACU
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14) |
Tissue expression
|
|
Mature sequence |
Cja-Mir-330-v2_5p |
mirBase accession | None |
Sequence |
0- UCUCUGGGCCUGUGUCUUAGGCU -23
Get sequence
|
Co-mature sequence |
Cja-Mir-330-v2_3p |
mirBase accession | None |
Sequence |
39- GCAAAGCACACGGCCUGCAGAGAGG -64
Get sequence
|