MirGeneDB ID | Cja-Mir-330-v2 |
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Family name | MIR-330 (all species) |
Seed | CUCUGGG |
Species | White-tufted-ear marmoset (Callithrix jacchus) |
MiRBase ID | |
Paralogues | Cja-Mir-330-v1 |
Orthologues | Bta-Mir-330-v2 Cfa-Mir-330-v2 Cpo-Mir-330-v2 Dno-Mir-330-v2 Eca-Mir-330-v2 Ete-Mir-330-v2 Hsa-Mir-330-v2 Laf-Mir-330 Mml-Mir-330-v2 Mmr-Mir-330-v2 Mmu-Mir-330-v2 Ocu-Mir-330-v2 Pab-Mir-330-v2 Rno-Mir-330-v2 |
Node of Origin (locus) | Eutheria |
Node of Origin (family) | Eutheria |
Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021936.1: 38389745-38389808 [-] UCSC Ensembl |
Precursor (pre-Mir +30nt flank) | CGUGCUGUGUGAUCUUUGGCGAUCACUGCCUCUCUGGGCCUGUGUCUUAGGCUCUGCAAGAUCAACCGAGCAAAGCACACGGCCUGCAGAGAGGCAGCGCUCUGCCCCUUACUCGGCCGCGGUGGet precursor sequence |
Structure | 10 20 30 40 50 60 CGUGCUGUGUGAUCUUU- - UCA -- -| U AG CUGCAAG GGC GA CUGCCUCUCUG GGCC UGUG CUU GCU \ CCG CU GACGGAGAGAC CCGG ACAC GAA CGA A GUGGCGCCGGCUCAUUCC U CGC GU C^ - A- GCCAACU 120 110 100 90 80 70 |
Deep sequencing | |
3' NTU | No |
Motifs | UG at 5p(-14) |
Mature sequence | Cja-Mir-330-v2_5p |
mirBase accession | None |
Sequence |
0- UCUCUGGGCCUGUGUCUUAGGCU -23
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|
Co-mature sequence | Cja-Mir-330-v2_3p |
mirBase accession | None |
Sequence |
39- GCAAAGCACACGGCCUGCAGAGAGG -64
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