MirGeneDB ID | Cja-Mir-330-v1 |
Family name |
MIR-330 (all species) |
Seed |
CUCUGGG |
Species |
White-tufted-ear marmoset (Callithrix jacchus) |
MiRBase ID |
|
Paralogues |
Cja-Mir-330-v2
|
Orthologues |
Bta-Mir-330-v1
Cfa-Mir-330
Cpo-Mir-330-v1
Dno-Mir-330-v1
Eca-Mir-330-v1
Ete-Mir-330-v1
Hsa-Mir-330-v1
Laf-Mir-330
Mml-Mir-330-v1
Mmr-Mir-330-v1
Mmu-Mir-330-v1
Ocu-Mir-330-v1
Pab-Mir-330-v1
Rno-Mir-330-v1
|
Node of Origin (locus) |
Eutheria
|
Node of Origin (family) |
Eutheria
|
Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021936.1: 38389745-38389808 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CGUGCUGUGUGAUCUUUGGCGAUCACUGCCUCUCUGGGCCUGUGUCUUAGGCUCUGCAAGAUCAACCGAGCAAAGCACACGGCCUGCAGAGAGGCAGCGCUCUGCCCCUUACUCGGCCGCGGUG
Get precursor sequence
|
Structure | 10 20 30 40 50 60
CGUGCUGUGUGAUCUUU- - UCA -- -| U AG UCUGCAAG
GGC GA CUGCCUCUCUG GGCC UGUG CUU GC \
CCG CU GACGGAGAGAC CCGG ACAC GAA CG A
GUGGCGCCGGCUCAUUCC U CGC GU C^ - A- AGCCAACU
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14) |
Tissue expression
|
|
Mature sequence |
Cja-Mir-330-v1_5p |
mirBase accession | None |
Sequence |
0- UCUCUGGGCCUGUGUCUUAGGC -22
Get sequence
|
Co-mature sequence |
Cja-Mir-330-v1_3p |
mirBase accession | None |
Sequence |
40- CAAAGCACACGGCCUGCAGAGAGG -64
Get sequence
|