MirGeneDB 3.0
MirGeneDB ID

Cja-Mir-330-v1

Family name MIR-330 (all species)
Seed CUCUGGG
Species White-tufted-ear marmoset (Callithrix jacchus)
MiRBase ID
Paralogues Cja-Mir-330-v2 
Orthologues Bta-Mir-330-v1  Cfa-Mir-330-v1  Cpo-Mir-330-v1  Dno-Mir-330-v1  Eca-Mir-330-v1  Ete-Mir-330-v1  Hsa-Mir-330-v1  Laf-Mir-330  Mml-Mir-330-v1  Mmr-Mir-330-v1  Mmu-Mir-330-v1  Ocu-Mir-330-v1  Pab-Mir-330-v1  Rno-Mir-330-v1 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)		 CM021936.1: 38389745-38389808 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CGUGCUGUGUGAUCUUUGGCGAUCACUGCCUCUCUGGGCCUGUGUCUUAGGCUCUGCAAGAUCAACCGAGCAAAGCACACGGCCUGCAGAGAGGCAGCGCUCUGCCCCUUACUCGGCCGCGGUG
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Structure
        10         20         30          40         50        60 
CGUGCUGUGUGAUCUUU-   -  UCA           --    -|   U   AG  UCUGCAAG 
                  GGC GA   CUGCCUCUCUG  GGCC UGUG CUU  GC        \
                  CCG CU   GACGGAGAGAC  CCGG ACAC GAA  CG        A
GUGGCGCCGGCUCAUUCC   U  CGC           GU    C^   -   A-  AGCCAACU 
  120       110       100        90        80          70
Deep sequencing
3' NTU No
MotifsUG at 5p(-14)
Mature sequence

Cja-Mir-330-v1_5p
mirBase accessionNone
Sequence 
0- UCUCUGGGCCUGUGUCUUAGGC -22
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Co-mature sequence

Cja-Mir-330-v1_3p
mirBase accessionNone
Sequence 
40- CAAAGCACACGGCCUGCAGAGAGG -64
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