MirGeneDB 3.0
MirGeneDB ID

Pab-Mir-330-v1

Family name MIR-330 (all species)
Seed AAAGCAC
Species Sumatran orangutan (Pongo abelii)
MiRBase ID
Paralogues Pab-Mir-330-v2 
Orthologues Bta-Mir-330-v1  Cfa-Mir-330  Cja-Mir-330-v1  Cpo-Mir-330-v1  Dno-Mir-330-v1  Eca-Mir-330-v1  Ete-Mir-330-v1  Hsa-Mir-330-v1  Laf-Mir-330  Mml-Mir-330-v1  Mmr-Mir-330-v1  Mmu-Mir-330-v1  Ocu-Mir-330-v1  Rno-Mir-330-v1 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces)		 CM054699.2: 51692394-51692457 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CGUGCUGUGUGAUCUUUGGCGAUCACUGCCUCUCUGGGCCUGUGUCUUAGGCUCUGCAAGAUCAACCGAGCAAAGCACACGGCCUGCAGAGAGGCAGCGCUCUGCCCCUUACUCGGCCCUGUUU
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Structure
        10         20         30          40         50        60 
CGUGCUGUGUGAUCUUU-   -  UCA           --    -|   U   AG   CUGCAAG 
                  GGC GA   CUGCCUCUCUG  GGCC UGUG CUU  GCU       \
                  CCG CU   GACGGAGAGAC  CCGG ACAC GAA  CGA       A
UUUGUCCCGGCUCAUUCC   U  CGC           GU    C^   -   A-   GCCAACU 
  120       110       100        90        80          70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14)
Tissue expression
-   +
Br Br Li Li
Star sequence

Pab-Mir-330-v1_5p*
mirBase accessionNone
Sequence 
0- UCUCUGGGCCUGUGUCUUAGGCU -23
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Mature sequence

Pab-Mir-330-v1_3p
mirBase accessionNone
Sequence 
40- CAAAGCACACGGCCUGCAGAGAGG -64
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