MirGeneDB ID | Ete-Mir-330-v1 |
Family name |
MIR-330 (all species) |
Seed |
CUCUGGG |
Species |
Lesser hedgehog tenrec (Echinops telfairi) |
MiRBase ID |
|
Paralogues |
Ete-Mir-330-v2
|
Orthologues |
Bta-Mir-330-v1
Cfa-Mir-330
Cja-Mir-330-v1
Cpo-Mir-330-v1
Dno-Mir-330-v1
Eca-Mir-330-v1
Hsa-Mir-330-v1
Laf-Mir-330
Mml-Mir-330-v1
Mmr-Mir-330-v1
Mmu-Mir-330-v1
Ocu-Mir-330-v1
Pab-Mir-330-v1
Rno-Mir-330-v1
|
Node of Origin (locus) |
Eutheria
|
Node of Origin (family) |
Eutheria
|
Genome context (echTel2) |
JH980338: 10700566-10700629 [-]
UCSC
|
Precursor (pre-Mir +30nt flank) |
CGUGCUGUGUGAUCUUGGGCGAUCACUGCCUCUCUGGGCCUGUGUCUUAGGCUCUGCGUGUUCGACCGAGCAAAGCACACGGCCUGCAGAGAGCCAGCGCUCCGCUCCGCUCCUACCGCGGCGC
Get precursor sequence
|
Structure | 10 20 30 40 50 60
CGUGCUGUGUGAUCUUG- AUCA- C -- -| U AG CUGCGUG
GGCG CUG CUCUCUG GGCC UGUG CUU GCU \
UCGC GAC GAGAGAC CCGG ACAC GAA CGA U
CGCGGCGCCAUCCUCGCC CUCGC C GU C^ - A- GCCAGCU
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Ete-Mir-330-v1_5p |
mirBase accession | None |
Sequence |
0- UCUCUGGGCCUGUGUCUUAGGCU -23
Get sequence
|
Co-mature sequence |
Ete-Mir-330-v1_3p |
mirBase accession | None |
Sequence |
40- CAAAGCACACGGCCUGCAGAGAGC -64
Get sequence
|