MirGeneDB 3.0
MirGeneDB ID

Eca-Mir-330-v1

Family name MIR-330 (all species)
Seed CUCUGGG
Species Horse (Equus caballus)
MiRBase ID eca-mir-330
Paralogues Eca-Mir-330-v2 
Orthologues Bta-Mir-330-v1  Cfa-Mir-330-v1  Cja-Mir-330-v1  Cpo-Mir-330-v1  Dno-Mir-330-v1  Ete-Mir-330-v1  Hsa-Mir-330-v1  Laf-Mir-330  Mml-Mir-330-v1  Mmr-Mir-330-v1  Mmu-Mir-330-v1  Ocu-Mir-330-v1  Pab-Mir-330-v1  Rno-Mir-330-v1 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_002863925.1_EquCab3.0)		 CM009157.1: 16353448-16353511 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-330-v1)		 Mir-330-v1 CM009157.1: 16353448-16353511 [-] UCSC Ensembl
Mir-330-v2 CM009157.1: 16353448-16353511 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CGUGCUGUGUGAUCCUUGGCGUUCACUGCCUCUCUGGGCCUGUGUCUUAGGCUCUUCAAGAUCAACCGAGCAAAGCACACGGCCUGCAGAGAGGCAGCGCUGCGCUCCUUACGCGGCCCCCCUU
Get precursor sequence
Structure
        10         20         30          40         50        60 
CGUGCUGUGUGAUCCUU-     UCA-           --    -|   U   AG   CUUCAAG 
                  GGCGU    CUGCCUCUCUG  GGCC UGUG CUU  GCU       \
                  UCGCG    GACGGAGAGAC  CCGG ACAC GAA  CGA       A
UUCCCCCCGGCGCAUUCC     UCGC           GU    C^   -   A-   GCCAACU 
  120       110       100        90        80          70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14)
Tissue expression
-   +
Er Er Er Er Er Er Er Er Er Er Er Er Er Er Er Er Er Er Er Er
Mature sequence

Eca-Mir-330-v1_5p
mirBase accessionMIMAT0013012
Sequence 
0- UCUCUGGGCCUGUGUCUUAGGCU -23
Get sequence
Star sequence

Eca-Mir-330-v1_3p*
mirBase accessionNone
Sequence 
40- CAAAGCACACGGCCUGCAGAGAGG -64
Get sequence