MirGeneDB 3.0
MirGeneDB ID

Laf-Mir-330

Family name MIR-330 (all species)
Seed CUCUGGG
Species African bush elephant (Loxodonta africana)
MiRBase ID
Paralogues
Orthologues Bta-Mir-330-v1  Bta-Mir-330-v2  Cfa-Mir-330  Cja-Mir-330-v1  Cja-Mir-330-v2  Cpo-Mir-330-v1  Cpo-Mir-330-v2  Dno-Mir-330-v1  Dno-Mir-330-v2  Eca-Mir-330-v1  Eca-Mir-330-v2  Ete-Mir-330-v1  Ete-Mir-330-v2  Hsa-Mir-330-v1  Hsa-Mir-330-v2  Mml-Mir-330-v1  Mml-Mir-330-v2  Mmr-Mir-330-v1  Mmr-Mir-330-v2  Mmu-Mir-330-v1  Mmu-Mir-330-v2  Ocu-Mir-330-v1  Ocu-Mir-330-v2  Pab-Mir-330-v1  Pab-Mir-330-v2  Rno-Mir-330-v1  Rno-Mir-330-v2 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_000001905.1_Loxafr3.0)		 GL010031.1: 4826440-4826503 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CGUGCUGUGUGAUCUUGGGCGAUCACUGCCUCUCUGGGCCUGUGUCUUAGGCUCUGCACGCUCAACCGAGCAAAGCACACGGCCUGCAGAGAGCCAGCGCUCCGCUCCUUCCGCGGCCCCCAGC
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Structure
        10         20         30          40         50        60 
CGUGCUGUGUGAUCUUG-    AUCA-   C       --    -|   U   AG   CUGCACG 
                  GGCG     CUG CUCUCUG  GGCC UGUG CUU  GCU       \
                  UCGC     GAC GAGAGAC  CCGG ACAC GAA  CGA       C
CGACCCCCGGCGCCUUCC    CUCGC   C       GU    C^   -   A-   GCCAACU 
  120       110       100        90        80          70
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Wh
Mature sequence

Laf-Mir-330_5p (predicted)
mirBase accessionNone
Sequence 
0- UCUCUGGGCCUGUGUCUUAGGCU -23
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Co-mature sequence

Laf-Mir-330_3p (predicted)
mirBase accessionNone
Sequence 
40- CAAAGCACACGGCCUGCAGAGAGC -64
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