| MirGeneDB ID | Laf-Mir-330 |
|---|---|
| Family name | MIR-330 (all species) |
| Seed | CUCUGGG |
| Species | African bush elephant (Loxodonta africana) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Bta-Mir-330-v1 Bta-Mir-330-v2 Cfa-Mir-330-v1 Cfa-Mir-330-v2 Cja-Mir-330-v1 Cja-Mir-330-v2 Cpo-Mir-330-v1 Cpo-Mir-330-v2 Dno-Mir-330-v1 Dno-Mir-330-v2 Eca-Mir-330-v1 Eca-Mir-330-v2 Ete-Mir-330-v1 Ete-Mir-330-v2 Hsa-Mir-330-v1 Hsa-Mir-330-v2 Mml-Mir-330-v1 Mml-Mir-330-v2 Mmr-Mir-330-v1 Mmr-Mir-330-v2 Mmu-Mir-330-v1 Mmu-Mir-330-v2 Ocu-Mir-330-v1 Ocu-Mir-330-v2 Pab-Mir-330-v1 Pab-Mir-330-v2 Rno-Mir-330-v1 Rno-Mir-330-v2 |
| Node of Origin (locus) | Eutheria |
| Node of Origin (family) | Eutheria |
| Genome context (GCA_000001905.1_Loxafr3.0) |
GL010031.1: 4826440-4826503 [-] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | CGUGCUGUGUGAUCUUGGGCGAUCACUGCCUCUCUGGGCCUGUGUCUUAGGCUCUGCACGCUCAACCGAGCAAAGCACACGGCCUGCAGAGAGCCAGCGCUCCGCUCCUUCCGCGGCCCCCAGCGet precursor sequence |
| Structure | 10 20 30 40 50 60 CGUGCUGUGUGAUCUUG- AUCA- C -- -| U AG CUGCACG GGCG CUG CUCUCUG GGCC UGUG CUU GCU \ UCGC GAC GAGAGAC CCGG ACAC GAA CGA C CGACCCCCGGCGCCUUCC CUCGC C GU C^ - A- GCCAACU 120 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17) |
| Mature sequence | Laf-Mir-330_5p (predicted) |
| mirBase accession | None |
| Sequence |
0- UCUCUGGGCCUGUGUCUUAGGCU -23
Get sequence
|
| Co-mature sequence | Laf-Mir-330_3p (predicted) |
| mirBase accession | None |
| Sequence |
40- CAAAGCACACGGCCUGCAGAGAGC -64
Get sequence
|
