MirGeneDB 3.0
MirGeneDB ID

Cpo-Mir-330-v2

Family name MIR-330 (all species)
Seed CUCUGGG
Species Guinea pig (Cavia porcellus)
MiRBase ID cpo-mir-330
Paralogues Cpo-Mir-330-v1 
Orthologues Bta-Mir-330-v2  Cfa-Mir-330  Cja-Mir-330-v2  Dno-Mir-330-v2  Eca-Mir-330-v2  Ete-Mir-330-v2  Hsa-Mir-330-v2  Laf-Mir-330  Mml-Mir-330-v2  Mmr-Mir-330-v2  Mmu-Mir-330-v2  Ocu-Mir-330-v2  Pab-Mir-330-v2  Rno-Mir-330-v2 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(cavPor3)		 scaffold_80: 6059868-6059931 [-] UCSC
Clustered miRNAs
(< 50kb from Mir-330-v2)		 Mir-330-v1 scaffold_80: 6059868-6059931 [-] UCSC
Mir-330-v2 scaffold_80: 6059868-6059931 [-] UCSC
Precursor
(pre-Mir +30nt flank)
CCUGCUGUGUGAUCUUUGGCGAUCACUGCCUCUCUGGGCCUGUGUCUUAGGCUCUGCAAGAUCAACCGAGCAAAGCACACGGCCUGCAGAGAGGCAGAGCUUCGCCCCGCACUCGGCCCCCACA
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Structure
        10         20         30          40         50        60 
CCUGCUGUGUGAUCUUU-     UCA-           --    -|   U   AG    UGCAAG 
                  GGCGA    CUGCCUCUCUG  GGCC UGUG CUU  GCUC      \
                  CCGCU    GACGGAGAGAC  CCGG ACAC GAA  CGAG      A
ACACCCCCGGCUCACGCC     UCGA           GU    C^   -   A-    CCAACU 
  120       110       100        90        80          70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14)
Tissue expression
-   +
Bl Bl Bl Bl Oo Oo Oo Oo To Wh
Mature sequence

Cpo-Mir-330-v2_5p
mirBase accessionMIMAT0047166
Sequence 
0- UCUCUGGGCCUGUGUCUUAGGCUC -24
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Co-mature sequence

Cpo-Mir-330-v2_3p
mirBase accessionMIMAT0047167
Sequence 
39- GCAAAGCACACGGCCUGCAGAGAGG -64
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