MirGeneDB 3.0
MirGeneDB ID

Cfa-Mir-330

Family name MIR-330 (all species)
Seed CUCUGGG
Species Dog (Canis familiaris)
MiRBase ID cfa-mir-330
Paralogues
Orthologues Bta-Mir-330-v1  Bta-Mir-330-v2  Cja-Mir-330-v1  Cja-Mir-330-v2  Cpo-Mir-330-v1  Cpo-Mir-330-v2  Dno-Mir-330-v1  Dno-Mir-330-v2  Eca-Mir-330-v1  Eca-Mir-330-v2  Ete-Mir-330-v1  Ete-Mir-330-v2  Hsa-Mir-330-v1  Hsa-Mir-330-v2  Laf-Mir-330  Mml-Mir-330-v1  Mml-Mir-330-v2  Mmr-Mir-330-v1  Mmr-Mir-330-v2  Mmu-Mir-330-v1  Mmu-Mir-330-v2  Ocu-Mir-330-v1  Ocu-Mir-330-v2  Pab-Mir-330-v1  Pab-Mir-330-v2  Rno-Mir-330-v1  Rno-Mir-330-v2 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(canFam3_add)		 chr1: 109922155-109922218 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CGUGCUGUGUGAUCUUUGGCGAUCACUGCCUCUCUGGGCCUGUGUCUUAGGCUCUGCAAGAUCAACCGAGCAAAGCACACGGCCUGCAGAGAGGCAGCGCUCCGCUCCUUACGCGGCCCCCAUU
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Structure
        10         20         30          40         50        60 
CGUGCUGUGUGAUCUUU-    AUCA-           --    -|   U   AG   CUGCAAG 
                  GGCG     CUGCCUCUCUG  GGCC UGUG CUU  GCU       \
                  UCGC     GACGGAGAGAC  CCGG ACAC GAA  CGA       A
UUACCCCCGGCGCAUUCC    CUCGC           GU    C^   -   A-   GCCAACU 
  120       110       100        90        80          70
Deep sequencing
3' NTU No
MotifsUG at 5p(-14)
Mature sequence

Cfa-Mir-330_5p
mirBase accessionMIMAT0009893
Sequence 
0- UCUCUGGGCCUGUGUCUUAGGCU -23
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Proposed targets TargetScanVert: cfa-miR-330
miRDB: MIMAT0009893
Star sequence

Cfa-Mir-330_3p*
mirBase accessionNone
Sequence 
40- CAAAGCACACGGCCUGCAGAGAGG -64
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