MirGeneDB ID | Ocu-Mir-330-v1 |
Family name |
MIR-330 (all species) |
Seed |
CUCUGGG |
Species |
Rabbit (Oryctolagus cuniculus) |
MiRBase ID |
|
Paralogues |
Ocu-Mir-330-v2
|
Orthologues |
Bta-Mir-330-v1
Cfa-Mir-330
Cja-Mir-330-v1
Cpo-Mir-330-v1
Dno-Mir-330-v1
Eca-Mir-330-v1
Ete-Mir-330-v1
Hsa-Mir-330-v1
Laf-Mir-330
Mml-Mir-330-v1
Mmr-Mir-330-v1
Mmu-Mir-330-v1
Pab-Mir-330-v1
Rno-Mir-330-v1
|
Node of Origin (locus) |
Eutheria
|
Node of Origin (family) |
Eutheria
|
Genome context (oryCun2_add) |
2060960366: 224-287 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AGUGCUGUGUGAUCUCUGGCGACCACUGCCUCUCUGGGCCUGUGUCUUAGGCUCUGCACGAUCAACCGAGCAAAGCACACGGCCUGCAGAGAGGCAGCGCUCCGCUGCUUAUUCGGCCCCCCAG
Get precursor sequence
|
Structure | 10 20 30 40 50 60
AGUGCUGUGUGAUCUCU- ACCA- -- -| U AG CUGCACG
GGCG CUGCCUCUCUG GGCC UGUG CUU GCU \
UCGC GACGGAGAGAC CCGG ACAC GAA CGA A
GACCCCCCGGCUUAUUCG CUCGC GU C^ - A- GCCAACU
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
Comment | Not in assembly but in trace archive. |
3' NTU |
No
|
Motifs | UG at 5p(-14) |
Tissue expression
|
|
Mature sequence |
Ocu-Mir-330-v1_5p |
mirBase accession | None |
Sequence |
0- UCUCUGGGCCUGUGUCUUAGGCU -23
Get sequence
|
Star sequence |
Ocu-Mir-330-v1_3p* |
mirBase accession | None |
Sequence |
40- CAAAGCACACGGCCUGCAGAGAGG -64
Get sequence
|