MirGeneDB ID | Pab-Mir-330-v2 |
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Family name | MIR-330 (all species) |
Seed | CAAAGCA |
Species | Sumatran orangutan (Pongo abelii) |
MiRBase ID | |
Paralogues | Pab-Mir-330-v1 |
Orthologues | Bta-Mir-330-v2 Cfa-Mir-330-v2 Cja-Mir-330-v2 Cpo-Mir-330-v2 Dno-Mir-330-v2 Eca-Mir-330-v2 Ete-Mir-330-v2 Hsa-Mir-330-v2 Laf-Mir-330 Mml-Mir-330-v2 Mmr-Mir-330-v2 Mmu-Mir-330-v2 Ocu-Mir-330-v2 Rno-Mir-330-v2 |
Node of Origin (locus) | Eutheria |
Node of Origin (family) | Eutheria |
Genome context (GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054699.2: 51692394-51692457 [-] UCSC Ensembl |
Precursor (pre-Mir +30nt flank) | CGUGCUGUGUGAUCUUUGGCGAUCACUGCCUCUCUGGGCCUGUGUCUUAGGCUCUGCAAGAUCAACCGAGCAAAGCACACGGCCUGCAGAGAGGCAGCGCUCUGCCCCUUACUCGGCCCUGUUUGet precursor sequence |
Structure | 10 20 30 40 50 60 CGUGCUGUGUGAUCUUU- - UCA -- -| U AG UGCAAG GGC GA CUGCCUCUCUG GGCC UGUG CUU GCUC \ CCG CU GACGGAGAGAC CCGG ACAC GAA CGAG A UUUGUCCCGGCUCAUUCC U CGC GU C^ - A- CCAACU 120 110 100 90 80 70 |
Deep sequencing | |
3' NTU | No |
Motifs | UG at 5p(-14) |
Star sequence | Pab-Mir-330-v2_5p* |
mirBase accession | None |
Sequence |
0- UCUCUGGGCCUGUGUCUUAGGCUC -24
Get sequence
|
Mature sequence | Pab-Mir-330-v2_3p |
mirBase accession | None |
Sequence |
39- GCAAAGCACACGGCCUGCAGAGAGG -64
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