MirGeneDB 3.0
MirGeneDB ID

Pab-Mir-330-v2

Family name MIR-330 (all species)
Seed CAAAGCA
Species Sumatran orangutan (Pongo abelii)
MiRBase ID
Paralogues Pab-Mir-330-v1 
Orthologues Bta-Mir-330-v2  Cfa-Mir-330  Cja-Mir-330-v2  Cpo-Mir-330-v2  Dno-Mir-330-v2  Eca-Mir-330-v2  Ete-Mir-330-v2  Hsa-Mir-330-v2  Laf-Mir-330  Mml-Mir-330-v2  Mmr-Mir-330-v2  Mmu-Mir-330-v2  Ocu-Mir-330-v2  Rno-Mir-330-v2 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces)		 CM054699.2: 51692394-51692457 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CGUGCUGUGUGAUCUUUGGCGAUCACUGCCUCUCUGGGCCUGUGUCUUAGGCUCUGCAAGAUCAACCGAGCAAAGCACACGGCCUGCAGAGAGGCAGCGCUCUGCCCCUUACUCGGCCCUGUUU
Get precursor sequence
Structure
        10         20         30          40         50        60 
CGUGCUGUGUGAUCUUU-   -  UCA           --    -|   U   AG    UGCAAG 
                  GGC GA   CUGCCUCUCUG  GGCC UGUG CUU  GCUC      \
                  CCG CU   GACGGAGAGAC  CCGG ACAC GAA  CGAG      A
UUUGUCCCGGCUCAUUCC   U  CGC           GU    C^   -   A-    CCAACU 
  120       110       100        90        80          70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14)
Tissue expression
-   +
Br Br Li Li
Star sequence

Pab-Mir-330-v2_5p*
mirBase accessionNone
Sequence 
0- UCUCUGGGCCUGUGUCUUAGGCUC -24
Get sequence
Mature sequence

Pab-Mir-330-v2_3p
mirBase accessionNone
Sequence 
39- GCAAAGCACACGGCCUGCAGAGAGG -64
Get sequence