MirGeneDB ID | Cja-Mir-339 |
Family name |
MIR-339 (all species) |
Seed |
GAGCGCC |
Species |
White-tufted-ear marmoset (Callithrix jacchus) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Bta-Mir-339
Cfa-Mir-339
Cpo-Mir-339
Dno-Mir-339
Eca-Mir-339
Ete-Mir-339
Hsa-Mir-339
Laf-Mir-339
Mml-Mir-339
Mmr-Mir-339
Mmu-Mir-339
Ocu-Mir-339
Pab-Mir-339
Rno-Mir-339
|
Node of Origin (locus) |
Eutheria
|
Node of Origin (family) |
Eutheria
|
Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021916.1: 56078200-56078257 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CUGUACUCUGCUGGGGCGGGGCGGCCGCUCUCCCUGUCCUCCAGGAGCUCACGUGUGCCUGCCUGUGAGCGCCUCGACGACAGAGCCGGCGCCCGCCCCAGUGUCCGCGCCUGGACGG
Get precursor sequence
|
Structure | 10 20 30 40 50
CUGUACUCUGCUGGGGC--| C CUCC C C A UGUG
GGGGCGG CGCU CUGUC UC AGG GCUCACG C
CCCCGCC GCGG GACAG AG UCC CGAGUGU C
GGCAGGUCCGCGCCUGUGA^ C CCGA C C G CCGU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17), UGUG in loop |
Tissue expression
|
|
Star sequence |
Cja-Mir-339_5p* |
mirBase accession | None |
Sequence |
0- UCCCUGUCCUCCAGGAGCUCACG -23
Get sequence
|
Mature sequence |
Cja-Mir-339_3p |
mirBase accession | None |
Sequence |
35- UGAGCGCCUCGACGACAGAGCCG -58
Get sequence
|