MirGeneDB ID | Cja-Mir-339 |
---|---|
Family name | MIR-339 (all species) |
Seed | GAGCGCC |
Species | White-tufted-ear marmoset (Callithrix jacchus) |
MiRBase ID | |
Paralogues | |
Orthologues | Bta-Mir-339 Cfa-Mir-339 Cpo-Mir-339 Dno-Mir-339 Eca-Mir-339 Ete-Mir-339 Hsa-Mir-339 Laf-Mir-339 Mml-Mir-339 Mmr-Mir-339 Mmu-Mir-339 Ocu-Mir-339 Pab-Mir-339 Rno-Mir-339 |
Node of Origin (locus) | Eutheria |
Node of Origin (family) | Eutheria |
Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021916.1: 56078200-56078257 [+] UCSC Ensembl |
Precursor (pre-Mir +30nt flank) | CUGUACUCUGCUGGGGCGGGGCGGCCGCUCUCCCUGUCCUCCAGGAGCUCACGUGUGCCUGCCUGUGAGCGCCUCGACGACAGAGCCGGCGCCCGCCCCAGUGUCCGCGCCUGGACGGGet precursor sequence |
Structure | 10 20 30 40 50 CUGUACUCUGCUGGGGC--| C CUCC C C A UGUG GGGGCGG CGCU CUGUC UC AGG GCUCACG C CCCCGCC GCGG GACAG AG UCC CGAGUGU C GGCAGGUCCGCGCCUGUGA^ C CCGA C C G CCGU 110 100 90 80 70 60 |
Deep sequencing | |
3' NTU | No |
Motifs | CNNC at 3p(+17), UGUG in loop |
Star sequence | Cja-Mir-339_5p* |
mirBase accession | None |
Sequence |
0- UCCCUGUCCUCCAGGAGCUCACG -23
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|
Mature sequence | Cja-Mir-339_3p |
mirBase accession | None |
Sequence |
35- UGAGCGCCUCGACGACAGAGCCG -58
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