MirGeneDB 3.0
MirGeneDB ID

Ocu-Mir-339

Family name MIR-339 (all species)
Seed GAGCGCC
Species Rabbit (Oryctolagus cuniculus)
MiRBase ID
Paralogues
Orthologues Bta-Mir-339  Cfa-Mir-339  Cja-Mir-339  Cpo-Mir-339  Dno-Mir-339  Eca-Mir-339  Ete-Mir-339  Hsa-Mir-339  Laf-Mir-339  Mml-Mir-339  Mmr-Mir-339  Mmu-Mir-339  Pab-Mir-339  Rno-Mir-339 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(oryCun2_add)		 610623971: 240-297 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GCGGCAGGUGGAGCCAGCUGGCGGCCGCCCUCCCUGUCCUCCAGGAGCUCACGUCGGCCUGCCUGUGAGCGCCUCGACGACAGAGCCGGCGUCCGCACAGCGUCCGCGCGUCCACGGC
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Structure
        10         20         30        40        50        
GCGGCAGGUGGAGCCAG-   -|   C    CUCC     C  C   A       UCGG 
                  CUG GCGG CGCC    CUGUC UC AGG GCUCACG    C
                  GAC CGCC GCGG    GACAG AG UCC CGAGUGU    C
CGGCACCUGCGCGCCUGC   A^   U    CCGA     C  C   G       CCGU 
      110       100        90        80        70        60
Deep sequencing
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CommentNot in assembly but in trace archive.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
He Ki Te To Wh
Star sequence

Ocu-Mir-339_5p*
mirBase accessionNone
Sequence 
0- UCCCUGUCCUCCAGGAGCUCACG -23
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Mature sequence

Ocu-Mir-339_3p
mirBase accessionNone
Sequence 
35- UGAGCGCCUCGACGACAGAGCCG -58
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