MirGeneDB 2.1
MirGeneDB ID

Rno-Mir-339

Family name MIR-339 (all species)
Seed CCCUGUC
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-339
Paralogues
Orthologues Bta-Mir-339  Cfa-Mir-339  Cpo-Mir-339  Dno-Mir-339  Ete-Mir-339  Hsa-Mir-339  Mml-Mir-339  Mmu-Mir-339  Ocu-Mir-339 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(rn6)		 chr12: 17369017-17369074 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GCUGUGCAGAGCUGGACGGGGUGGACACCGUCCCUGUCCUCCAGGAGCUCACGUAUGCCUGCCUGUGAGCGCCUCGACGACAGAGCCAGAGUCCACCCCUGCACUGCCCAAAGACCCU
Get precursor sequence
Structure
        10          20         30        40        50        
GCUGUGCAGAGCUGGAC--         ACC-| CC     C  C   A       UAUG 
                   GGGGUGGAC    GU  CUGUC UC AGG GCUCACG    C
                   CCCCACCUG    CG  GACAG AG UCC CGAGUGU    C
UCCCAGAAACCCGUCACGU         AGAC^ A-     C  C   G       CCGU 
      110       100        90         80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Ad Ad Br Br Br Ce Ce Ce Ce Co Co Co Co Dr Dr Du Du Du Du He He Hi Hi Il Il Je Je Ki Ki Ki Ki Li Li Li Li Me Me Mu Mu Mu Mu Mu Mu Mu Mu Ov Pa Pa St St St Te Ut Wh Br Fa He Ki La Li Li Lu Mu Pa Sk Sm Sp St Te Th
Mature sequence

Rno-Mir-339_5p
mirBase accessionMIMAT0000583
Sequence 
0- UCCCUGUCCUCCAGGAGCUCACG -23
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Proposed targets microrna.org: MIMAT0000583
TargetScanVert: rno-miR-339-5p
miRDB: MIMAT0000583
Co-mature sequence

Rno-Mir-339_3p
mirBase accessionMIMAT0004648
Sequence 
35- UGAGCGCCUCGACGACAGAGCCA -58
Get sequence
Proposed targets microrna.org: MIMAT0004648
TargetScanVert: rno-miR-339-3p
miRDB: MIMAT0004648