MirGeneDB 3.0
MirGeneDB ID

Pab-Mir-339

Family name MIR-339 (all species)
Seed GAGCGCC
Species Sumatran orangutan (Pongo abelii)
MiRBase ID
Paralogues
Orthologues Bta-Mir-339  Cfa-Mir-339  Cja-Mir-339  Cpo-Mir-339  Dno-Mir-339  Eca-Mir-339  Ete-Mir-339  Hsa-Mir-339  Laf-Mir-339  Mml-Mir-339  Mmr-Mir-339  Mmu-Mir-339  Ocu-Mir-339  Rno-Mir-339 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces)		 CM054685.2: 1035586-1035643 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCGUGCUCCGCAGGGGCGGGGCGGCCGCUCUCCCUGUCCUCCAGGAGCUCACGUGUGCCUGCCUGUGAGCGCCUCGACGACAGAGCCGGCGCCCGCCCCAGUGUCUGCGCCAGGACCA
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Structure
        10          20        30        40        50        
CCGUGCUCCGCAGGGGC--|      C    CUCC     C  C   A       UGUG 
                   GGGGCGG CGCU    CUGUC UC AGG GCUCACG    C
                   CCCCGCC GCGG    GACAG AG UCC CGAGUGU    C
ACCAGGACCGCGUCUGUGA^      C    CCGA     C  C   G       CCGU 
      110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Br Br Li Li
Star sequence

Pab-Mir-339_5p*
mirBase accessionNone
Sequence 
0- UCCCUGUCCUCCAGGAGCUCACG -23
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Mature sequence

Pab-Mir-339_3p
mirBase accessionNone
Sequence 
35- UGAGCGCCUCGACGACAGAGCCG -58
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