| MirGeneDB ID | Pab-Mir-339 |
|---|---|
| Family name | MIR-339 (all species) |
| Seed | GAGCGCC |
| Species | Sumatran orangutan (Pongo abelii) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Bta-Mir-339 Cfa-Mir-339 Cja-Mir-339 Cpo-Mir-339 Dno-Mir-339 Eca-Mir-339 Ete-Mir-339 Hsa-Mir-339 Laf-Mir-339 Mml-Mir-339 Mmr-Mir-339 Mmu-Mir-339 Ocu-Mir-339 Rno-Mir-339 |
| Node of Origin (locus) | Eutheria |
| Node of Origin (family) | Eutheria |
| Genome context (GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054685.2: 1035586-1035643 [-] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | CCGUGCUCCGCAGGGGCGGGGCGGCCGCUCUCCCUGUCCUCCAGGAGCUCACGUGUGCCUGCCUGUGAGCGCCUCGACGACAGAGCCGGCGCCCGCCCCAGUGUCUGCGCCAGGACCAGet precursor sequence |
| Structure | 10 20 30 40 50 CCGUGCUCCGCAGGGGC--| C CUCC C C A UGUG GGGGCGG CGCU CUGUC UC AGG GCUCACG C CCCCGCC GCGG GACAG AG UCC CGAGUGU C ACCAGGACCGCGUCUGUGA^ C CCGA C C G CCGU 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | No |
| Motifs | CNNC at 3p(+17), UGUG in loop |
| Star sequence | Pab-Mir-339_5p* |
| mirBase accession | None |
| Sequence |
0- UCCCUGUCCUCCAGGAGCUCACG -23
Get sequence
|
| Mature sequence | Pab-Mir-339_3p |
| mirBase accession | None |
| Sequence |
35- UGAGCGCCUCGACGACAGAGCCG -58
Get sequence
|
