MirGeneDB ID | Laf-Mir-339 |
---|---|
Family name | MIR-339 (all species) |
Seed | CCCUGUC |
Species | African bush elephant (Loxodonta africana) |
MiRBase ID | |
Paralogues | |
Orthologues | Bta-Mir-339 Cfa-Mir-339 Cja-Mir-339 Cpo-Mir-339 Dno-Mir-339 Eca-Mir-339 Ete-Mir-339 Hsa-Mir-339 Mml-Mir-339 Mmr-Mir-339 Mmu-Mir-339 Ocu-Mir-339 Pab-Mir-339 Rno-Mir-339 |
Node of Origin (locus) | Eutheria |
Node of Origin (family) | Eutheria |
Genome context (GCA_000001905.1_Loxafr3.0) |
GL010072.1: 2906424-2906479 [-] UCSC Ensembl |
Precursor (pre-Mir +30nt flank) | UGGGGUUCUGGGAUCCCGAGACAGCCGCUGUCCCUGUCCUCCAGGAGCUCACGUGUCCGGCUGUGAGCUCCCCGAGGGCAGAGCCCGUGUCUGCCUCCAUGCAGCACCCAGCCCCGGet precursor sequence |
Structure | 10 20 30 40 50 UGGGGUUCUGGGAUCCC-- A C U-| CC CA UGU GAG CAG CGC GU CUGUCCUC GGAGCUCACG C CUC GUC GUG CG GACGGGAG CCUCGAGUGU C GCCCCGACCCACGACGUAC C U CC^ A- CC CGG 110 100 90 80 70 60 |
Deep sequencing | |
3' NTU | Unknown |
Motifs | CNNC at 3p(+17), UGUG in loop |
Mature sequence | Laf-Mir-339_5p |
mirBase accession | None |
Sequence |
0- UCCCUGUCCUCCAGGAGCUCACG -23
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|
Star sequence | Laf-Mir-339_3p* |
mirBase accession | None |
Sequence |
33- UGAGCUCCCCGAGGGCAGAGCCC -56
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|