MirGeneDB 3.0
MirGeneDB ID

Laf-Mir-339

Family name MIR-339 (all species)
Seed CCCUGUC
Species African bush elephant (Loxodonta africana)
MiRBase ID
Paralogues
Orthologues Bta-Mir-339  Cfa-Mir-339  Cja-Mir-339  Cpo-Mir-339  Dno-Mir-339  Eca-Mir-339  Ete-Mir-339  Hsa-Mir-339  Mml-Mir-339  Mmr-Mir-339  Mmu-Mir-339  Ocu-Mir-339  Pab-Mir-339  Rno-Mir-339 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_000001905.1_Loxafr3.0)		 GL010072.1: 2906424-2906479 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGGGGUUCUGGGAUCCCGAGACAGCCGCUGUCCCUGUCCUCCAGGAGCUCACGUGUCCGGCUGUGAGCUCCCCGAGGGCAGAGCCCGUGUCUGCCUCCAUGCAGCACCCAGCCCCG
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Structure
        10          20         30        40        50       
UGGGGUUCUGGGAUCCC--   A   C   U-| CC        CA          UGU 
                   GAG CAG CGC  GU  CUGUCCUC  GGAGCUCACG   C
                   CUC GUC GUG  CG  GACGGGAG  CCUCGAGUGU   C
GCCCCGACCCACGACGUAC   C   U   CC^ A-        CC          CGG 
    110       100        90         80        70        60
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Wh
Mature sequence

Laf-Mir-339_5p
mirBase accessionNone
Sequence 
0- UCCCUGUCCUCCAGGAGCUCACG -23
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Star sequence

Laf-Mir-339_3p*
mirBase accessionNone
Sequence 
33- UGAGCUCCCCGAGGGCAGAGCCC -56
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