| MirGeneDB ID | Laf-Mir-339 |
|---|---|
| Family name | MIR-339 (all species) |
| Seed | CCCUGUC |
| Species | African bush elephant (Loxodonta africana) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Bta-Mir-339 Cfa-Mir-339 Cja-Mir-339 Cpo-Mir-339 Dno-Mir-339 Eca-Mir-339 Ete-Mir-339 Hsa-Mir-339 Mml-Mir-339 Mmr-Mir-339 Mmu-Mir-339 Ocu-Mir-339 Pab-Mir-339 Rno-Mir-339 |
| Node of Origin (locus) | Eutheria |
| Node of Origin (family) | Eutheria |
| Genome context (GCA_000001905.1_Loxafr3.0) |
GL010072.1: 2906424-2906479 [-] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | UGGGGUUCUGGGAUCCCGAGACAGCCGCUGUCCCUGUCCUCCAGGAGCUCACGUGUCCGGCUGUGAGCUCCCCGAGGGCAGAGCCCGUGUCUGCCUCCAUGCAGCACCCAGCCCCGGet precursor sequence |
| Structure | 10 20 30 40 50 UGGGGUUCUGGGAUCCC-- A C U-| CC CA UGU GAG CAG CGC GU CUGUCCUC GGAGCUCACG C CUC GUC GUG CG GACGGGAG CCUCGAGUGU C GCCCCGACCCACGACGUAC C U CC^ A- CC CGG 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17), UGUG in loop |
| Mature sequence | Laf-Mir-339_5p |
| mirBase accession | None |
| Sequence |
0- UCCCUGUCCUCCAGGAGCUCACG -23
Get sequence
|
| Star sequence | Laf-Mir-339_3p* |
| mirBase accession | None |
| Sequence |
33- UGAGCUCCCCGAGGGCAGAGCCC -56
Get sequence
|
