| MirGeneDB ID | Eca-Mir-339 |
|---|
| Family name |
MIR-339 (all species) |
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| Seed |
CCCUGUC |
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| Species |
Horse (Equus caballus) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
Bta-Mir-339
Cfa-Mir-339
Cja-Mir-339
Cpo-Mir-339
Dno-Mir-339
Ete-Mir-339
Hsa-Mir-339
Laf-Mir-339
Mml-Mir-339
Mmr-Mir-339
Mmu-Mir-339
Ocu-Mir-339
Pab-Mir-339
Rno-Mir-339
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| Node of Origin (locus) |
Eutheria
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| Node of Origin (family) |
Eutheria
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Genome context
(GCA_002863925.1_EquCab3.0) |
CM009160.1: 724107-724164 [-]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
GGACAGCCCCCGGGACCGUGGCAGCCGCUUUCCCUGUCCUCCAGGAGCUCACUUACAUCCGGCCGUGAGCUCCCCGAGGCCAGAGCCCGUGUCUGCCUCAUUGUCAGCGCCAGCACCA
Get precursor sequence
|
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| Structure | 10 20 30 40 50
GGACAGCCCCCGGGACCGU--| C UUUCC U CA UUACA
GGCAG CGC CUG CCUC GGAGCUCAC U
CCGUC GUG GAC GGAG CCUCGAGUG C
ACCACGACCGCGACUGUUACU^ U CCCGA C CC CCGGC
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
Unknown
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Er |
Er |
Er |
Er |
Er |
Er |
Er |
Er |
Er |
Er |
Er |
Er |
Er |
Er |
Er |
Er |
Er |
Er |
Er |
Er |
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| Mature sequence |
Eca-Mir-339_5p |
| mirBase accession | None |
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| Sequence |
0- UCCCUGUCCUCCAGGAGCUCACU -23
Get sequence
|
|---|
| Star sequence |
Eca-Mir-339_3p* |
| mirBase accession | None |
|---|
| Sequence |
35- UGAGCUCCCCGAGGCCAGAGCCC -58
Get sequence
|
|---|
