MirGeneDB 3.0
MirGeneDB ID

Cja-Mir-340

Family name MIR-340 (all species)
Seed UAUAAAG
Species White-tufted-ear marmoset (Callithrix jacchus)
MiRBase ID
Paralogues
Orthologues Bta-Mir-340  Cfa-Mir-340  Cpo-Mir-340  Dno-Mir-340  Eca-Mir-340  Ete-Mir-340  Hsa-Mir-340  Laf-Mir-340  Mml-Mir-340  Mmr-Mir-340  Mmu-Mir-340  Ocu-Mir-340  Pab-Mir-340  Rno-Mir-340-P1  Rno-Mir-340-P2 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)		 CM021916.1: 68420018-68420082 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GAUUUCUAAAACCGUUUGUACCUGGUGUGAUUAUAAAGCAAUGAGACUGAUUGUCAUAUGUUGUUUGUGGGAUCCGUCUCAGUUACUUUAUAGCCAUACCUGGUAUCUUAUACCACAGAUCAUGG
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Structure
        10          20        30        40         50        60 
GAUUUCUAAAACCGUUU--     U      AU       CAA-|     U    GUCAUAUG 
                   GUACC GGUGUG  UAUAAAG    UGAGAC GAUU        U
                   UAUGG CCAUAC  AUAUUUC    ACUCUG CUAG        U
GGUACUAGACACCAUAUUC     U      CG       AUUG^     C    GGUGUUUG 
   120       110       100        90        80        70
Deep sequencing
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3' NTU Yes
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
To
Mature sequence

Cja-Mir-340_5p
mirBase accessionNone
Sequence 
0- UUAUAAAGCAAUGAGACUGAUU -22
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Star sequence

Cja-Mir-340_3p*
mirBase accessionNone
Sequence 
42- UCCGUCUCAGUUACUUUAUAGCC -65
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