| MirGeneDB ID | Cja-Mir-340 |
|---|---|
| Family name | MIR-340 (all species) |
| Seed | UAUAAAG |
| Species | White-tufted-ear marmoset (Callithrix jacchus) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Bta-Mir-340 Cfa-Mir-340 Cpo-Mir-340 Dno-Mir-340 Eca-Mir-340 Ete-Mir-340 Hsa-Mir-340 Laf-Mir-340 Mml-Mir-340 Mmr-Mir-340 Mmu-Mir-340 Ocu-Mir-340 Pab-Mir-340 Rno-Mir-340-P1 Rno-Mir-340-P2 |
| Node of Origin (locus) | Eutheria |
| Node of Origin (family) | Eutheria |
| Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021916.1: 68420018-68420082 [+] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | GAUUUCUAAAACCGUUUGUACCUGGUGUGAUUAUAAAGCAAUGAGACUGAUUGUCAUAUGUUGUUUGUGGGAUCCGUCUCAGUUACUUUAUAGCCAUACCUGGUAUCUUAUACCACAGAUCAUGGGet precursor sequence |
| Structure | 10 20 30 40 50 60 GAUUUCUAAAACCGUUU-- U AU CAA-| U GUCAUAUG GUACC GGUGUG UAUAAAG UGAGAC GAUU U UAUGG CCAUAC AUAUUUC ACUCUG CUAG U GGUACUAGACACCAUAUUC U CG AUUG^ C GGUGUUUG 120 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | Yes |
| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
| Mature sequence | Cja-Mir-340_5p |
| mirBase accession | None |
| Sequence |
0- UUAUAAAGCAAUGAGACUGAUU -22
Get sequence
|
| Star sequence | Cja-Mir-340_3p* |
| mirBase accession | None |
| Sequence |
42- UCCGUCUCAGUUACUUUAUAGCC -65
Get sequence
|
