MirGeneDB ID | Laf-Mir-340 |
---|---|
Family name | MIR-340 (all species) |
Seed | UAUAAAG |
Species | African bush elephant (Loxodonta africana) |
MiRBase ID | |
Paralogues | |
Orthologues | Bta-Mir-340 Cfa-Mir-340 Cja-Mir-340 Cpo-Mir-340 Dno-Mir-340 Eca-Mir-340 Ete-Mir-340 Hsa-Mir-340 Mml-Mir-340 Mmr-Mir-340 Mmu-Mir-340 Ocu-Mir-340 Pab-Mir-340 Rno-Mir-340-P1 Rno-Mir-340-P2 |
Node of Origin (locus) | Eutheria |
Node of Origin (family) | Eutheria |
Genome context (GCA_000001905.1_Loxafr3.0) |
GL010028.1: 106588477-106588541 [-] UCSC Ensembl |
Precursor (pre-Mir +30nt flank) | GAUUCCUAAAACUGUUUGUACCUGGUGUGAUUAUAAAGCAAUGAGACUGAUUGUCAUGUGUAGUUUGUGGGAUCCGUCUCAGUUACUUUAUAGCCAUACCUGGUAUCUUAUACCACAGAUCAUUGGet precursor sequence |
Structure | 10 20 30 40 50 60 GAUUCCUAAAACUGUUU-- U AU CAA-| U GUCAUGUG GUACC GGUGUG UAUAAAG UGAGAC GAUU U UAUGG CCAUAC AUAUUUC ACUCUG CUAG A GUUACUAGACACCAUAUUC U CG AUUG^ C GGUGUUUG 120 110 100 90 80 70 |
Deep sequencing | |
3' NTU | No |
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Mature sequence | Laf-Mir-340_5p |
mirBase accession | None |
Sequence |
0- UUAUAAAGCAAUGAGACUGAUU -22
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|
Star sequence | Laf-Mir-340_3p* |
mirBase accession | None |
Sequence |
42- UCCGUCUCAGUUACUUUAUAGCC -65
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