MirGeneDB 3.0
MirGeneDB ID

Cpo-Mir-340

Family name MIR-340 (all species)
Seed UAUAAAG
Species Guinea pig (Cavia porcellus)
MiRBase ID cpo-mir-340
Paralogues
Orthologues Bta-Mir-340  Cfa-Mir-340  Cja-Mir-340  Dno-Mir-340  Eca-Mir-340  Ete-Mir-340  Hsa-Mir-340  Laf-Mir-340  Mml-Mir-340  Mmr-Mir-340  Mmu-Mir-340  Ocu-Mir-340  Pab-Mir-340  Rno-Mir-340-P1  Rno-Mir-340-P2 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(cavPor3)		 scaffold_176: 84280-84344 [+] UCSC
Precursor
(pre-Mir +30nt flank)
GAGUUCUAAAACCACUUGUACCUGGUGUGAUUAUAAAGCAAUGAGACUGAUUGUCAUUUGUCUUUUGUGGGAUCCGUCUCAGUUACUUUAUAGCCAGACCUGGUAUCUUAACCACAGAUCCUUGC
Get precursor sequence
Structure
        10          20        30        40         50        60 
GAGUUCUAAAACCACUU--     U   G  AU       CAA-|     U    GUCAUUUG 
                   GUACC GGU UG  UAUAAAG    UGAGAC GAUU        U
                   UAUGG CCA AC  AUAUUUC    ACUCUG CUAG        C
CGUUCCUAGACACCAAUUC     U   G  CG       AUUG^     C    GGUGUUUU 
   120       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Bl Bl Bl Bl Oo Oo Oo Oo To Wh
Mature sequence

Cpo-Mir-340_5p
mirBase accessionMIMAT0047178
Sequence 
0- UUAUAAAGCAAUGAGACUGAUU -22
Get sequence
Star sequence

Cpo-Mir-340_3p*
mirBase accessionMIMAT0047179
Sequence 
42- UCCGUCUCAGUUACUUUAUAGCC -65
Get sequence