MirGeneDB 3.0

MirGeneDB ID

Mml-Mir-340

Family name MIR-340 (all species)
Seed UAUAAAG
Species Rhesus monkey (Macaca mulatta)
MiRBase ID mml-mir-340
Paralogues
Orthologues Bta-Mir-340  Cfa-Mir-340  Cja-Mir-340  Cpo-Mir-340  Dno-Mir-340  Eca-Mir-340  Ete-Mir-340  Hsa-Mir-340  Laf-Mir-340  Mmr-Mir-340  Mmu-Mir-340  Ocu-Mir-340  Pab-Mir-340  Rno-Mir-340-P1  Rno-Mir-340-P2 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_003339765.3_Mmul_10_traces)
CM014341.1: 177423810-177423874 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GAUUUCUAAAACCAUUUGUACCUGGUGUGAUUAUAAAGCAAUGAGACUGAUUGUCAUAUGUUGUUUGUGGGAUCCGUCUCAGUUACUUUAUAGCCAUACCUGGUAUCUUAUACCACAGAUCAUGG
Get precursor sequence
Structure
        10          20        30        40         50        60 
GAUUUCUAAAACCAUUU--     U      AU       CAA-|     U    GUCAUAUG 
                   GUACC GGUGUG  UAUAAAG    UGAGAC GAUU        U
                   UAUGG CCAUAC  AUAUUUC    ACUCUG CUAG        U
GGUACUAGACACCAUAUUC     U      CG       AUUG^     C    GGUGUUUG 
   120       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
Bo Br Br Br He Ki Li Lu Ly Sk Sp Te Th
Mature sequence

Mml-Mir-340_5p

mirBase accessionMIMAT0006281
Sequence
0- UUAUAAAGCAAUGAGACUGAUU -22
Get sequence
Proposed targets TargetScanVert: mml-miR-340-5p
Star sequence

Mml-Mir-340_3p*

mirBase accessionMIMAT0026854
Sequence
42- UCCGUCUCAGUUACUUUAUAGCC -65
Get sequence
Proposed targets TargetScanVert: mml-miR-340-3p