MirGeneDB ID | Mml-Mir-340 |
Family name |
MIR-340 (all species) |
Seed |
UAUAAAG |
Species |
Rhesus monkey (Macaca mulatta) |
MiRBase ID |
mml-mir-340
|
Paralogues |
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Orthologues |
Bta-Mir-340
Cfa-Mir-340
Cja-Mir-340
Cpo-Mir-340
Dno-Mir-340
Eca-Mir-340
Ete-Mir-340
Hsa-Mir-340
Laf-Mir-340
Mmr-Mir-340
Mmu-Mir-340
Ocu-Mir-340
Pab-Mir-340
Rno-Mir-340-P1
Rno-Mir-340-P2
|
Node of Origin (locus) |
Eutheria
|
Node of Origin (family) |
Eutheria
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Genome context (GCA_003339765.3_Mmul_10_traces) |
CM014341.1: 177423810-177423874 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GAUUUCUAAAACCAUUUGUACCUGGUGUGAUUAUAAAGCAAUGAGACUGAUUGUCAUAUGUUGUUUGUGGGAUCCGUCUCAGUUACUUUAUAGCCAUACCUGGUAUCUUAUACCACAGAUCAUGG
Get precursor sequence
|
Structure | 10 20 30 40 50 60
GAUUUCUAAAACCAUUU-- U AU CAA-| U GUCAUAUG
GUACC GGUGUG UAUAAAG UGAGAC GAUU U
UAUGG CCAUAC AUAUUUC ACUCUG CUAG U
GGUACUAGACACCAUAUUC U CG AUUG^ C GGUGUUUG
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
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Bo |
Br |
Br |
Br |
He |
Ki |
Li |
Lu |
Ly |
Sk |
Sp |
Te |
Th |
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Mature sequence |
Mml-Mir-340_5p |
mirBase accession | MIMAT0006281 |
Sequence |
0- UUAUAAAGCAAUGAGACUGAUU -22
Get sequence
|
Proposed targets |
TargetScanVert: mml-miR-340-5p
|
Star sequence |
Mml-Mir-340_3p* |
mirBase accession | MIMAT0026854 |
Sequence |
42- UCCGUCUCAGUUACUUUAUAGCC -65
Get sequence
|
Proposed targets |
TargetScanVert: mml-miR-340-3p
|