| MirGeneDB ID | Eca-Mir-340 |
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| Family name |
MIR-340 (all species) |
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| Seed |
UAUAAAG |
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| Species |
Horse (Equus caballus) |
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| MiRBase ID |
eca-mir-340
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| Paralogues |
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| Orthologues |
Bta-Mir-340
Cfa-Mir-340
Cja-Mir-340
Cpo-Mir-340
Dno-Mir-340
Ete-Mir-340
Hsa-Mir-340
Laf-Mir-340
Mml-Mir-340
Mmr-Mir-340
Mmu-Mir-340
Ocu-Mir-340
Pab-Mir-340
Rno-Mir-340-P1
Rno-Mir-340-P2
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| Node of Origin (locus) |
Eutheria
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| Node of Origin (family) |
Eutheria
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Genome context
(GCA_002863925.1_EquCab3.0) |
CM009161.1: 1765478-1765542 [+]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
CUGACUCUAAACUGCUUGUACCUGGUGUGGUUAUAAAGCAAUGAGACUGAUUGUCAUGUGUCGCUUGUGGGAUCCGUCUCAGUUACUUUAUAGCCAUACCUGGUAUCUUAUACCACAGAUCAUUG
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
CUGACUCUAAACUGCUU-- U CAA-| U GUCAUGUG
GUACC GGUGUGGUUAUAAAG UGAGAC GAUU U
UAUGG CCAUACCGAUAUUUC ACUCUG CUAG C
GUUACUAGACACCAUAUUC U AUUG^ C GGUGUUCG
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
No
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| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
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| Ps |
Bo |
Ca |
Em |
En |
En |
En |
En |
En |
En |
En |
Gl |
He |
He |
Ho |
Im |
Ki |
Li |
Lo |
Lu |
Ma |
Ma |
Mi |
Pl |
Sp |
Te |
Tr |
Ut |
Ut |
Yo |
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| Mature sequence |
Eca-Mir-340_5p |
| mirBase accession | MIMAT0013066 |
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| Sequence |
0- UUAUAAAGCAAUGAGACUGAUU -22
Get sequence
|
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| Star sequence |
Eca-Mir-340_3p* |
| mirBase accession | MIMAT0013067 |
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| Sequence |
42- UCCGUCUCAGUUACUUUAUAGCC -65
Get sequence
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