MirGeneDB 3.0
MirGeneDB ID

Eca-Mir-340

Family name MIR-340 (all species)
Seed UAUAAAG
Species Horse (Equus caballus)
MiRBase ID eca-mir-340
Paralogues
Orthologues Bta-Mir-340  Cfa-Mir-340  Cja-Mir-340  Cpo-Mir-340  Dno-Mir-340  Ete-Mir-340  Hsa-Mir-340  Laf-Mir-340  Mml-Mir-340  Mmr-Mir-340  Mmu-Mir-340  Ocu-Mir-340  Pab-Mir-340  Rno-Mir-340-P1  Rno-Mir-340-P2 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_002863925.1_EquCab3.0)		 CM009161.1: 1765478-1765542 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUGACUCUAAACUGCUUGUACCUGGUGUGGUUAUAAAGCAAUGAGACUGAUUGUCAUGUGUCGCUUGUGGGAUCCGUCUCAGUUACUUUAUAGCCAUACCUGGUAUCUUAUACCACAGAUCAUUG
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Structure
        10          20        30        40         50        60 
CUGACUCUAAACUGCUU--     U               CAA-|     U    GUCAUGUG 
                   GUACC GGUGUGGUUAUAAAG    UGAGAC GAUU        U
                   UAUGG CCAUACCGAUAUUUC    ACUCUG CUAG        C
GUUACUAGACACCAUAUUC     U               AUUG^     C    GGUGUUCG 
   120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Er Er Er Er Er Er Er Er Er Er Er Er Er Er Er Er Er Er Er Er
Mature sequence

Eca-Mir-340_5p
mirBase accessionMIMAT0013066
Sequence 
0- UUAUAAAGCAAUGAGACUGAUU -22
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Star sequence

Eca-Mir-340_3p*
mirBase accessionMIMAT0013067
Sequence 
42- UCCGUCUCAGUUACUUUAUAGCC -65
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