MirGeneDB 3.0
MirGeneDB ID

Pab-Mir-340

Family name MIR-340 (all species)
Seed UAUAAAG
Species Sumatran orangutan (Pongo abelii)
MiRBase ID
Paralogues
Orthologues Bta-Mir-340  Cfa-Mir-340  Cja-Mir-340  Cpo-Mir-340  Dno-Mir-340  Eca-Mir-340  Ete-Mir-340  Hsa-Mir-340  Laf-Mir-340  Mml-Mir-340  Mmr-Mir-340  Mmu-Mir-340  Ocu-Mir-340  Rno-Mir-340-P1  Rno-Mir-340-P2 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces)		 CM054683.2: 188773915-188773979 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GAUUUCUAAAACCGUUUGUAUCUGGUGUGAUUAUAAAGCAAUGAGACUGAUUGUCAUAUGUCGUUUGUGGGAUCCGUCUCAGUUACUUUAUAGCCAUACCUGGUAUCUUAUACCACAGAUUAUGG
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Structure
        10          20        30        40         50        60 
GAUUUCUAAAACCGUUU--     U      AU       CAA-|     U    GUCAUAUG 
                   GUAUC GGUGUG  UAUAAAG    UGAGAC GAUU        U
                   UAUGG CCAUAC  AUAUUUC    ACUCUG CUAG        C
GGUAUUAGACACCAUAUUC     U      CG       AUUG^     C    GGUGUUUG 
   120       110       100        90        80        70
Deep sequencing
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3' NTU Unknown
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Br Br Li Li
Mature sequence

Pab-Mir-340_5p
mirBase accessionNone
Sequence 
0- UUAUAAAGCAAUGAGACUGAUU -22
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Star sequence

Pab-Mir-340_3p* (predicted)
mirBase accessionNone
Sequence 
42- UCCGUCUCAGUUACUUUAUAGCC -65
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