MirGeneDB ID | Cja-Mir-671 |
Family name |
MIR-671 (all species) |
Seed |
GGAAGCC |
Species |
White-tufted-ear marmoset (Callithrix jacchus) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Bta-Mir-671
Cfa-Mir-671
Cpo-Mir-671
Dno-Mir-671
Eca-Mir-671
Ete-Mir-671
Hsa-Mir-671
Laf-Mir-671
Mml-Mir-671
Mmr-Mir-671
Mmu-Mir-671
Neu-Mir-671
Ocu-Mir-671
Pab-Mir-671
Rno-Mir-671
Sha-Mir-671
|
Node of Origin (locus) |
Theria
|
Node of Origin (family) |
Theria
|
Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021922.1: 94286402-94286461 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UGGCAGGUGAACUGGCAGGCCAGGAAGAGGAGGAAGCCCUGGAGGGGCUGGAGGUGAUGGAUGUUUUCCUCCGGUUCUCAGGGCUCCACCUCUUUCGAGCCGUAGAGCCAGGGCUGGUGC
Get precursor sequence
|
Structure | 10 20 30 40 50 60
UGGCAGGUGAACUGGCA--| CA A A GA UGAUGG
GGC GGAAGAGG GGA GCCCUG GGGGCUGGAGG \
CCG CUUUCUCC CCU CGGGAC UCUUGGCCUCC A
CGUGGUCGGGACCGAGAUG^ AG A - -- UUUUGU
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Mature sequence |
Cja-Mir-671_5p |
mirBase accession | None |
Sequence |
0- AGGAAGCCCUGGAGGGGCUGGAGG -24
Get sequence
|
Co-mature sequence |
Cja-Mir-671_3p |
mirBase accession | None |
Sequence |
39- UCCGGUUCUCAGGGCUCCACC -60
Get sequence
|