MirGeneDB ID | Cja-Mir-671 |
---|---|
Family name | MIR-671 (all species) |
Seed | GGAAGCC |
Species | White-tufted-ear marmoset (Callithrix jacchus) |
MiRBase ID | |
Paralogues | |
Orthologues | Bta-Mir-671 Cfa-Mir-671 Cpo-Mir-671 Dno-Mir-671 Eca-Mir-671 Ete-Mir-671 Hsa-Mir-671 Laf-Mir-671 Mml-Mir-671 Mmr-Mir-671 Mmu-Mir-671 Neu-Mir-671 Ocu-Mir-671 Pab-Mir-671 Rno-Mir-671 Sha-Mir-671 |
Node of Origin (locus) | Theria |
Node of Origin (family) | Theria |
Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021922.1: 94286402-94286461 [-] UCSC Ensembl |
Precursor (pre-Mir +30nt flank) | UGGCAGGUGAACUGGCAGGCCAGGAAGAGGAGGAAGCCCUGGAGGGGCUGGAGGUGAUGGAUGUUUUCCUCCGGUUCUCAGGGCUCCACCUCUUUCGAGCCGUAGAGCCAGGGCUGGUGCGet precursor sequence |
Structure | 10 20 30 40 50 60 UGGCAGGUGAACUGGCA--| CA A A GA UGAUGG GGC GGAAGAGG GGA GCCCUG GGGGCUGGAGG \ CCG CUUUCUCC CCU CGGGAC UCUUGGCCUCC A CGUGGUCGGGACCGAGAUG^ AG A - -- UUUUGU . 110 100 90 80 70 |
Deep sequencing | |
3' NTU | No |
Motifs | No |
Mature sequence | Cja-Mir-671_5p |
mirBase accession | None |
Sequence |
0- AGGAAGCCCUGGAGGGGCUGGAGG -24
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|
Co-mature sequence | Cja-Mir-671_3p |
mirBase accession | None |
Sequence |
39- UCCGGUUCUCAGGGCUCCACC -60
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|