MirGeneDB 3.0

MirGeneDB ID

Laf-Mir-671

Family name MIR-671 (all species)
Seed GGAAGCC
Species African bush elephant (Loxodonta africana)
MiRBase ID
Paralogues
Orthologues Bta-Mir-671  Cfa-Mir-671  Cja-Mir-671  Cpo-Mir-671  Dno-Mir-671  Eca-Mir-671  Ete-Mir-671  Hsa-Mir-671  Mml-Mir-671  Mmr-Mir-671  Mmu-Mir-671  Neu-Mir-671  Ocu-Mir-671  Pab-Mir-671  Rno-Mir-671  Sha-Mir-671 
Node of Origin (locus) Theria
Node of Origin (family) Theria
Genome context
(GCA_000001905.1_Loxafr3.0)
GL010039.1: 59837438-59837497 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGGCUGGUGAACUGGCAGGCCAGGAAGAGGAGGAAGCCCUGGAGGGGCUGGAGGUGAUGGAUGUUUUCCUCCGGUUCUCAGGGCUCCACCUCUUCCGGGCCGUAGAGCCAGGGCUGGUGC
Get precursor sequence
Structure
        10          20        30        40        50        60 
UGGCUGGUGAACUGGCA--|   A        A   A      GA           UGAUGG 
                   GGCC GGAAGAGG GGA GCCCUG  GGGGCUGGAGG      \
                   CCGG CCUUCUCC CCU CGGGAC  UCUUGGCCUCC      A
CGUGGUCGGGACCGAGAUG^   G        A   -      --           UUUUGU 
.       110       100        90         80          70
Deep sequencing
Go to detailed chart
3' NTU Unknown
MotifsNo
Tissue expression
 +
Wh
Mature sequence

Laf-Mir-671_5p

mirBase accessionNone
Sequence
0- AGGAAGCCCUGGAGGGGCUGGAGG -24
Get sequence
Co-mature sequence

Laf-Mir-671_3p

mirBase accessionNone
Sequence
39- UCCGGUUCUCAGGGCUCCACC -60
Get sequence