MirGeneDB ID | Eca-Mir-671 |
Family name |
MIR-671 (all species) |
Seed |
CCGGUUC |
Species |
Horse (Equus caballus) |
MiRBase ID |
eca-mir-671
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Paralogues |
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Orthologues |
Bta-Mir-671
Cfa-Mir-671
Cja-Mir-671
Cpo-Mir-671
Dno-Mir-671
Ete-Mir-671
Hsa-Mir-671
Laf-Mir-671
Mml-Mir-671
Mmr-Mir-671
Mmu-Mir-671
Neu-Mir-671
Ocu-Mir-671
Pab-Mir-671
Rno-Mir-671
Sha-Mir-671
|
Node of Origin (locus) |
Theria
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Node of Origin (family) |
Theria
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Genome context (GCA_002863925.1_EquCab3.0) |
CM009151.1: 102950780-102950839 [+]
UCSC
Ensembl
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Precursor (pre-Mir +30nt flank) |
UGGCUGGCGAACUGGCAGGCCAGGAAGAGGAGGAAGCCCUGGAGGGGCUGGAGGUGAUGGAUGUUUUCCUCCGGUUCUCAGGGCUCCACCUCUUCCGGGCCGUGGAGCCAGGGCUGGUGC
Get precursor sequence
|
Structure | 10 20 30 40 50 60
UGGCUGGCGAACUGGCA--| A A A GA UGAUGG
GGCC GGAAGAGG GGA GCCCUG GGGGCUGGAGG \
CCGG CCUUCUCC CCU CGGGAC UCUUGGCCUCC A
CGUGGUCGGGACCGAGGUG^ G A - -- UUUUGU
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
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Motifs | No |
Tissue expression
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Ps |
Bo |
Ca |
Em |
En |
En |
En |
En |
En |
En |
En |
Gl |
He |
He |
Ho |
Im |
Ki |
Li |
Lo |
Lu |
Ma |
Ma |
Mi |
Pl |
Sp |
Te |
Tr |
Ut |
Ut |
Yo |
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Star sequence |
Eca-Mir-671_5p* |
mirBase accession | MIMAT0012948 |
Sequence |
0- AGGAAGCCCUGGAGGGGCUGGAGG -24
Get sequence
|
Mature sequence |
Eca-Mir-671_3p |
mirBase accession | MIMAT0012949 |
Sequence |
39- UCCGGUUCUCAGGGCUCCACC -60
Get sequence
|