MirGeneDB ID | Cpo-Mir-671 |
Family name |
MIR-671 (all species) |
Seed |
CCGGUUC |
Species |
Guinea pig (Cavia porcellus) |
MiRBase ID |
cpo-mir-671
|
Paralogues |
|
Orthologues |
Bta-Mir-671
Cfa-Mir-671
Cja-Mir-671
Dno-Mir-671
Eca-Mir-671
Ete-Mir-671
Hsa-Mir-671
Laf-Mir-671
Mml-Mir-671
Mmr-Mir-671
Mmu-Mir-671
Neu-Mir-671
Ocu-Mir-671
Pab-Mir-671
Rno-Mir-671
Sha-Mir-671
|
Node of Origin (locus) |
Theria
|
Node of Origin (family) |
Theria
|
Genome context (cavPor3) |
scaffold_32: 932637-932696 [+]
UCSC
|
Precursor (pre-Mir +30nt flank) |
UGGCUGGUGAACUGGCAGGCCAGGAAGAGGAGGAAGCCCUGGAGGGGCUGGAGGUGAUGGAUGUUUUCCUCCGGUUCUCAGGGCUCCACCUCUUUCGGGCCGUAGAGCCAGGGUUGGUGC
Get precursor sequence
|
Structure | 10 20 30 40 50 60
UGGCUGGUGAACUGGCA--| A A A GA UGAUGG
GGCC GGAAGAGG GGA GCCCUG GGGGCUGGAGG \
CCGG CUUUCUCC CCU CGGGAC UCUUGGCCUCC A
CGUGGUUGGGACCGAGAUG^ G A - -- UUUUGU
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
Bl |
Bl |
Bl |
Bl |
Oo |
Oo |
Oo |
Oo |
To |
Wh |
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Star sequence |
Cpo-Mir-671_5p* |
mirBase accession | MIMAT0047369 |
Sequence |
0- AGGAAGCCCUGGAGGGGCUGGAGG -24
Get sequence
|
Mature sequence |
Cpo-Mir-671_3p |
mirBase accession | MIMAT0047370 |
Sequence |
39- UCCGGUUCUCAGGGCUCCACC -60
Get sequence
|