| MirGeneDB ID | Cja-Mir-675 |
|---|---|
| Family name | MIR-675 (all species) |
| Seed | UGUAUGC |
| Species | White-tufted-ear marmoset (Callithrix jacchus) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Cfa-Mir-675 Cpo-Mir-675 Dno-Mir-675 Eca-Mir-675 Hsa-Mir-675 Laf-Mir-675 Mml-Mir-675 Mmr-Mir-675 Mmu-Mir-675 Neu-Mir-675 Pab-Mir-675 Rno-Mir-675 Sha-Mir-675 |
| Node of Origin (locus) | Theria |
| Node of Origin (family) | Theria |
| Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021925.1: 126637762-126637818 [+] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | CGUUCCCAUGAGGCACUGCGGCCCAGGGUCUGGUGCGGAGAGGGUCCACAGUGGACUUGGUGACACUGUAUGCCCUCACCGCCCAGCCCCUGGGACUGGCGUGACAGACAGUACAGCGet precursor sequence |
| Structure | 10 20 30 40 50 CGUUCCCAUGAGGCACUG- -| U U A CC GACU CGG CCCAGGG CUGG GCGG GAGGGU ACAGUG U GUC GGGUCCC GACC CGCC CUCCCG UGUCAC G CGACAUGACAGACAGUGCG A^ C - A UA AGUG 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | UG at 5p(-14) |
| Star sequence | Cja-Mir-675_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- UGGUGCGGAGAGGGUCCACAGUG -23
Get sequence
|
| Mature sequence | Cja-Mir-675_3p (predicted) |
| mirBase accession | None |
| Sequence |
35- CUGUAUGCCCUCACCGCCCAGC -57
Get sequence
|
