MirGeneDB 3.0
MirGeneDB ID

Cja-Mir-675

Family name MIR-675 (all species)
Seed UGUAUGC
Species White-tufted-ear marmoset (Callithrix jacchus)
MiRBase ID
Paralogues
Orthologues Cfa-Mir-675  Cpo-Mir-675  Dno-Mir-675  Eca-Mir-675  Hsa-Mir-675  Laf-Mir-675  Mml-Mir-675  Mmr-Mir-675  Mmu-Mir-675  Neu-Mir-675  Pab-Mir-675  Rno-Mir-675  Sha-Mir-675 
Node of Origin (locus) Theria
Node of Origin (family) Theria
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)		 CM021925.1: 126637762-126637818 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CGUUCCCAUGAGGCACUGCGGCCCAGGGUCUGGUGCGGAGAGGGUCCACAGUGGACUUGGUGACACUGUAUGCCCUCACCGCCCAGCCCCUGGGACUGGCGUGACAGACAGUACAGC
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Structure
        10         20         30        40        50        
CGUUCCCAUGAGGCACUG-   -|      U    U    A      CC      GACU 
                   CGG CCCAGGG CUGG GCGG GAGGGU  ACAGUG    U
                   GUC GGGUCCC GACC CGCC CUCCCG  UGUCAC    G
CGACAUGACAGACAGUGCG   A^      C    -    A      UA      AGUG 
     110       100        90         80        70        60
Deep sequencing
3' NTU Unknown
MotifsUG at 5p(-14)
Tissue expression
-   +
To
Star sequence

Cja-Mir-675_5p* (predicted)
mirBase accessionNone
Sequence 
0- UGGUGCGGAGAGGGUCCACAGUG -23
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Mature sequence

Cja-Mir-675_3p (predicted)
mirBase accessionNone
Sequence 
35- CUGUAUGCCCUCACCGCCCAGC -57
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