MirGeneDB 3.0

MirGeneDB ID

Pab-Mir-675

Family name MIR-675 (all species)
Seed UGUAUGC
Species Sumatran orangutan (Pongo abelii)
MiRBase ID
Paralogues
Orthologues Cfa-Mir-675  Cja-Mir-675  Cpo-Mir-675  Dno-Mir-675  Eca-Mir-675  Hsa-Mir-675  Laf-Mir-675  Mml-Mir-675  Mmr-Mir-675  Mmu-Mir-675  Neu-Mir-675  Rno-Mir-675  Sha-Mir-675 
Node of Origin (locus) Theria
Node of Origin (family) Theria
Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces)
CM054688.2: 1985962-1986018 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CGGUCCCACGAGGCACUGCGGCCCAGGGUCUGGUGCGGAGAGGGCCCACAGUGGACUUGGUGACGCUGUAUGCCCUCACCGCUCAGCCCCUGGGGCUGGCUUGGCAGACAGUACAGC
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Structure
        10         20         30        40        50        
CGGUCCCACGAGGCACUG-   -|      U    U    A      CC      GACU 
                   CGG CCCAGGG CUGG GCGG GAGGGC  ACAGUG    U
                   GUC GGGUCCC GACU CGCC CUCCCG  UGUCGC    G
CGACAUGACAGACGGUUCG   G^      C    -    A      UA      AGUG 
     110       100        90         80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14)
Tissue expression
 +
Br Br Li Li
Star sequence

Pab-Mir-675_5p*

mirBase accessionNone
Sequence
0- UGGUGCGGAGAGGGCCCACAGUG -23
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Mature sequence

Pab-Mir-675_3p (predicted)

mirBase accessionNone
Sequence
35- CUGUAUGCCCUCACCGCUCAGC -57
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