| MirGeneDB ID | Neu-Mir-675 |
|---|---|
| Family name | MIR-675 (all species) |
| Seed | GGAGCGG |
| Species | Tammar Wallaby (Notamacropus eugenii) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Cfa-Mir-675 Cja-Mir-675 Cpo-Mir-675 Dno-Mir-675 Eca-Mir-675 Hsa-Mir-675 Laf-Mir-675 Mml-Mir-675 Mmr-Mir-675 Mmu-Mir-675 Pab-Mir-675 Rno-Mir-675 Sha-Mir-675 |
| Node of Origin (locus) | Theria |
| Node of Origin (family) | Theria |
| Genome context (GCA_028372415.1_mMacEug1.pri) |
CM051814.1: 25820357-25820415 [+] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | CCUUCUCCAGGAACUCUGCAGCCCGGGAGCCGGAGCGGAGAAAGCAAACAGUGGAGGCUCCGAGCACUGUCUGCUUUAUCCGCUCCUGCUCCUGGGGCUGACCUAGCAAACGCGCAGCGGet precursor sequence |
| Structure | 10 20 30 40 50 CCUUCUCCAGGAACUCUG- -| C G A GAGGC CAG CCCGGGAGC GGAGCGGA AAAGCA ACAGUG \ GUC GGGUCCUCG CCUCGCCU UUUCGU UGUCAC U GCGACGCGCAAACGAUCCA G^ U A C GAGCC 110 100 90 80 70 60 |
| Deep sequencing | |
| Comment | There is a second Dicer cut -1 on both arms. Although the seed sequence differs between the marsupial vs. placental Mir-675's in both cases it resides in the H19 non-coding RNA syntenic with IGF2 the host gene for Mir-483. See Smits et al (2008) Nature Genetics 40:971. |
| 3' NTU | Yes |
| Motifs | UG at 5p(-14) |
| Mature sequence | Neu-Mir-675_5p |
| mirBase accession | None |
| Sequence |
0- CGGAGCGGAGAAAGCAAACAGUG -23
Get sequence
|
| Star sequence | Neu-Mir-675_3p* |
| mirBase accession | None |
| Sequence |
36- CUGUCUGCUUUAUCCGCUCCUGC -59
Get sequence
|
