| MirGeneDB ID | Sha-Mir-675 |
|---|
| Family name |
MIR-675 (all species) |
|---|
| Seed |
GGAGCGG |
|---|
| Species |
Tasmanian devil (Sarcophilus harrisii) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Cfa-Mir-675
Cpo-Mir-675
Dno-Mir-675
Hsa-Mir-675
Mml-Mir-675
Mmu-Mir-675
Rno-Mir-675
|
|---|
| Node of Origin (locus) |
Theria
|
|---|
| Node of Origin (family) |
Theria
|
|---|
Genome context
(DEVIL_add) |
GL865246.1: 162018-162075 [+]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
UUCUCCAGGAACUCUUUGCAGCCCGGGAGCCGGAGCGGAGAAAGCAAACAGUGGGGGCUCCAAGCACUGUCUGCUUUAUCCGCUCCUGCUCCUGGGGCUGACCUAGCAAACGCCAGCG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UUCUCCAGGAACUCUUUG -| C G A GGGGC
CAG CCCGGGAGC GGAGCGGA AAAGCA ACAGUG \
GUC GGGUCCUCG CCUCGCCU UUUCGU UGUCAC U
GCGACCGCAAACGAUCCA G^ U A C GAACC
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| Comment | There is a second Dicer cut -1 on both arms. Although the seed sequence differs between the marsupial vs. placental Mir-675's in both cases it resides in the H19 non-coding RNA syntenic with IGF2 the host gene for Mir-483. See Smits et al (2008) Nature Genetics 40:971. |
|---|
| 3' NTU |
Yes
|
|---|
| Motifs | UG at 5p(-14) |
|---|
Tissue expression
|
| Bo |
Br |
He |
Ki |
Li |
Ly |
Pa |
Sk |
Sp |
Te |
| |
|
|
|
|
|
|
|
|
|
|
|---|
| Mature sequence |
Sha-Mir-675_5p |
| mirBase accession | None |
|---|
| Sequence |
0- CGGAGCGGAGAAAGCAAACAGUG -23
Get sequence
|
|---|
| Star sequence |
Sha-Mir-675_3p* |
| mirBase accession | None |
|---|
| Sequence |
36- CUGUCUGCUUUAUCCGCUCCUG -58
Get sequence
|
|---|
