MirGeneDB ID | Dno-Mir-675 |
Family name |
MIR-675 (all species) |
Seed |
UGUAUGC |
Species |
Nine-banded armadillo (Dasypus novemcinctus) |
MiRBase ID |
dno-mir-675
|
Paralogues |
|
Orthologues |
Cfa-Mir-675
Cja-Mir-675
Cpo-Mir-675
Eca-Mir-675
Hsa-Mir-675
Laf-Mir-675
Mml-Mir-675
Mmr-Mir-675
Mmu-Mir-675
Neu-Mir-675
Pab-Mir-675
Rno-Mir-675
Sha-Mir-675
|
Node of Origin (locus) |
Theria
|
Node of Origin (family) |
Theria
|
Genome context (dasNov3) |
JH567658: 65304-65360 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CCGUCCCCACGCGCACUGCGGUCCAGGGGCUGGCGCGGGGAGGGCCGACAGUGGGCUUGGCGACACUGUAUGCGCUCACCGCCCAGCCCCUGGGGCUGGCCGGCAGACAGCUCUGCA
Get precursor sequence
|
Structure | 10 20 30 40 50
CCGUCCCCACGCGCACUG- -| C G G CG GGCU
CGG UCCAGGGGCUGG GCGG GAG GC ACAGUG U
GUC GGGUCCCCGACC CGCC CUC CG UGUCAC G
ACGUCUCGACAGACGGCCG G^ - A G UA AGCG
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14) |
Tissue expression
|
|
Star sequence |
Dno-Mir-675_5p* |
mirBase accession | MIMAT0048002 |
Sequence |
0- UGGCGCGGGGAGGGCCGACAGUG -23
Get sequence
|
Mature sequence |
Dno-Mir-675_3p |
mirBase accession | MIMAT0048003 |
Sequence |
35- CUGUAUGCGCUCACCGCCCAGC -57
Get sequence
|