MirGeneDB 3.0
MirGeneDB ID

Cli-Mir-140-P2-v1

Family name MIR-140 (all species)
Seed CCACAGG
Species Rock pigeon (Columba livia)
MiRBase ID cli-mir-140
Paralogues Cli-Mir-140-P2-v2 
Orthologues Aca-Mir-140-P2-v1  Aca-Mir-140-P2-v2  Ami-Mir-140-P2-v1  Ami-Mir-140-P2-v2  Bta-Mir-140-P2-v1  Bta-Mir-140-P2-v2  Cfa-Mir-140-P2-v1  Cfa-Mir-140-P2-v2  Cja-Mir-140-P2-v1  Cja-Mir-140-P2-v2  Cmi-Mir-140-P2-v1  Cmi-Mir-140-P2-v2  Cpi-Mir-140-P2-v1  Cpi-Mir-140-P2-v2  Cpo-Mir-140-P2-v1  Cpo-Mir-140-P2-v2  Dno-Mir-140-P2-v1  Dno-Mir-140-P2-v2  Dre-Mir-140-P2-v1  Dre-Mir-140-P2-v2  Eca-Mir-140-P2-v1  Eca-Mir-140-P2-v2  Ete-Mir-140-P2-v1  Ete-Mir-140-P2-v2  Gga-Mir-140-P2-v1  Gga-Mir-140-P2-v2  Gja-Mir-140-P2-v1  Gja-Mir-140-P2-v2  Gmo-Mir-140-P2-v1  Gmo-Mir-140-P2-v2  Hsa-Mir-140-P2-v1  Hsa-Mir-140-P2-v2  Lch-Mir-140-P2  Loc-Mir-140-P2-v1  Loc-Mir-140-P2-v2  Mal-Mir-140-P2-v1  Mal-Mir-140-P2-v2  Mdo-Mir-140-P2-v1  Mdo-Mir-140-P2-v2  Mml-Mir-140-P2-v1  Mml-Mir-140-P2-v2  Mmr-Mir-140-P2-v1  Mmr-Mir-140-P2-v2  Mmu-Mir-140-P2-v1  Mmu-Mir-140-P2-v2  Mun-Mir-140-P2-v1  Mun-Mir-140-P2-v2  Neu-Mir-140-P2-v1  Neu-Mir-140-P2-v2  Oan-Mir-140-P2-v1  Oan-Mir-140-P2-v2  Ocu-Mir-140-P2-v1  Ocu-Mir-140-P2-v2  Pab-Mir-140-P2-v1  Pab-Mir-140-P2-v2  Pma-Mir-140-o2  Rno-Mir-140-P2-v1  Rno-Mir-140-P2-v2  Sha-Mir-140-P2-v1  Sha-Mir-140-P2-v2  Spt-Mir-140-P2  Sto-Mir-140-P2-v1  Sto-Mir-140-P2-v2  Tgu-Mir-140-P2-v1  Tgu-Mir-140-P2-v2  Tni-Mir-140-P2-v1  Tni-Mir-140-P2-v2  Xla-Mir-140-P2a-v1  Xla-Mir-140-P2a-v2  Xla-Mir-140-P2b-v1  Xla-Mir-140-P2b-v2  Xtr-Mir-140-P2-v1  Xtr-Mir-140-P2-v2 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(colLiv2)		 scaffold123: 5480472-5480533 [-]
Clustered miRNAs
(< 50kb from Mir-140-P2-v1)		 Mir-140-P2-v1 scaffold123: 5480472-5480533 [-]
Mir-140-P2-v2 scaffold123: 5480472-5480533 [-]
Precursor
(pre-Mir +30nt flank)
UCCUGCUCGCCGCCUCUCUCCGUGUCCUGCCAGUGGUUUUACCCUAUGGUAGGUUACGUCAUGCUGUUCUACCACAGGGUAGAACCACGGACGGGAUGCUGGGGCUGCCUCUGCGGCCAAGG
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Structure
        10         20          30        40        50        60
UCCUGCUCGCCGCCUCU-    -        -| A             A      GUUACGU 
                  CUCC GUGUCCUG CC GUGGUUUUACCCU UGGUAG       C
                  GGGG CGUAGGGC GG CACCAAGAUGGGA ACCAUC       A
GGAACCGGCGUCUCCGUC    U        A^ -             C      UUGUCGU 
120       110       100        90         80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Li Mi Ov Pe Te To
Star sequence

Cli-Mir-140-P2-v1_5p*
mirBase accessionMIMAT0038527
Sequence 
0- CAGUGGUUUUACCCUAUGGUAG -22
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Mature sequence

Cli-Mir-140-P2-v1_3p
mirBase accessionMIMAT0038528
Sequence 
40- ACCACAGGGUAGAACCACGGAC -62
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