Mir-140-P2a-v1

MirGeneDB ID

Xla-Mir-140-P2a-v1

Family name

MIR-140 (all species)

Seed

CCACAGG

Species

African clawed frog (Xenopus laevis)

MiRBase ID

xla-mir-140-1

Paralogues

Xla-Mir-140-P2a-v2 Xla-Mir-140-P2b-v1 Xla-Mir-140-P2b-v2

Orthologues

Aca-Mir-140-P2-v1 Aca-Mir-140-P2-v2 Ami-Mir-140-P2-v1 Ami-Mir-140-P2-v2 Bta-Mir-140-P2-v1 Bta-Mir-140-P2-v2 Cfa-Mir-140-P2-v1 Cfa-Mir-140-P2-v2 Cja-Mir-140-P2-v1 Cja-Mir-140-P2-v2 Cli-Mir-140-P2-v1 Cli-Mir-140-P2-v2 Cmi-Mir-140-P2-v1 Cmi-Mir-140-P2-v2 Cpi-Mir-140-P2-v1 Cpi-Mir-140-P2-v2 Cpo-Mir-140-P2-v1 Cpo-Mir-140-P2-v2 Dno-Mir-140-P2-v1 Dno-Mir-140-P2-v2 Dre-Mir-140-P2-v1 Dre-Mir-140-P2-v2 Eca-Mir-140-P2-v1 Eca-Mir-140-P2-v2 Ete-Mir-140-P2-v1 Ete-Mir-140-P2-v2 Gga-Mir-140-P2-v1 Gga-Mir-140-P2-v2 Gja-Mir-140-P2-v1 Gja-Mir-140-P2-v2 Gmo-Mir-140-P2-v1 Gmo-Mir-140-P2-v2 Hsa-Mir-140-P2-v1 Hsa-Mir-140-P2-v2 Lch-Mir-140-P2 Loc-Mir-140-P2-v1 Loc-Mir-140-P2-v2 Mal-Mir-140-P2-v1 Mal-Mir-140-P2-v2 Mdo-Mir-140-P2-v1 Mdo-Mir-140-P2-v2 Mml-Mir-140-P2-v1 Mml-Mir-140-P2-v2 Mmr-Mir-140-P2-v1 Mmr-Mir-140-P2-v2 Mmu-Mir-140-P2-v1 Mmu-Mir-140-P2-v2 Mun-Mir-140-P2-v1 Mun-Mir-140-P2-v2 Neu-Mir-140-P2-v1 Neu-Mir-140-P2-v2 Oan-Mir-140-P2-v1 Oan-Mir-140-P2-v2 Ocu-Mir-140-P2-v1 Ocu-Mir-140-P2-v2 Pab-Mir-140-P2-v1 Pab-Mir-140-P2-v2 Pma-Mir-140-o2 Rno-Mir-140-P2-v1 Rno-Mir-140-P2-v2 Sha-Mir-140-P2-v1 Sha-Mir-140-P2-v2 Spt-Mir-140-P2 Sto-Mir-140-P2-v1 Sto-Mir-140-P2-v2 Tgu-Mir-140-P2-v1 Tgu-Mir-140-P2-v2 Tni-Mir-140-P2-v1 Tni-Mir-140-P2-v2 Xtr-Mir-140-P2-v1 Xtr-Mir-140-P2-v2

Node of Origin (locus)

X. laevis

Node of Origin (family)

Vertebrata

Genome context
(GCF_001663975.1_XLA_v2)

NC_030730.1: 49672494-49672555 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-140-P2a-v1)

Mir-140-P2a-v1 NC_030730.1: 49672494-49672555 [-] UCSC Ensembl
Mir-140-P2a-v2 NC_030730.1: 49672494-49672555 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GGCUGCUAUCCCUCUCUCUCUGUGUCCUCCCAGUGGUUUUACCCUAUGGUAGGUUACGUCAGGCUGUUCUACCACAGGGUAGAACCACGGACAGGAUAUGGGGAGCUCUCAACAUGGAGCAG

Get precursor sequence

Structure

        10          20         30        40        50        60
GGCUGCUAUCCCUCUCU--           C-| A             A      GUUACGU 
                   CUCUGUGUCCU  CC GUGGUUUUACCCU UGGUAG       C
                   GGGGUAUAGGA  GG CACCAAGAUGGGA ACCAUC       A
GACGAGGUACAACUCUCGA           CA^ -             C      UUGUCGG 
120       110       100        90         80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Em

Star sequence

Xla-Mir-140-P2a-v1_5p*

mirBase accession

MIMAT0046452

Sequence

0- CAGUGGUUUUACCCUAUGGUAG -22

Get sequence

Mature sequence

Xla-Mir-140-P2a-v1_3p

mirBase accession

MIMAT0046453

Sequence

40- ACCACAGGGUAGAACCACGGAC -62

Get sequence