Mir-140-P2-v2

MirGeneDB ID

Tgu-Mir-140-P2-v2

Family name

MIR-140 (all species)

Seed

ACCACAG

Species

Zebra finch (Taeniopygia guttata)

MiRBase ID

tgu-mir-140

Paralogues

Tgu-Mir-140-P2-v1

Orthologues

Aca-Mir-140-P2-v1 Aca-Mir-140-P2-v2 Ami-Mir-140-P2-v1 Ami-Mir-140-P2-v2 Bta-Mir-140-P2-v1 Bta-Mir-140-P2-v2 Cfa-Mir-140-P2-v1 Cfa-Mir-140-P2-v2 Cja-Mir-140-P2-v1 Cja-Mir-140-P2-v2 Cli-Mir-140-P2-v1 Cli-Mir-140-P2-v2 Cmi-Mir-140-P2-v1 Cmi-Mir-140-P2-v2 Cpi-Mir-140-P2-v1 Cpi-Mir-140-P2-v2 Cpo-Mir-140-P2-v1 Cpo-Mir-140-P2-v2 Dno-Mir-140-P2-v1 Dno-Mir-140-P2-v2 Dre-Mir-140-P2-v1 Dre-Mir-140-P2-v2 Eca-Mir-140-P2-v1 Eca-Mir-140-P2-v2 Ete-Mir-140-P2-v1 Ete-Mir-140-P2-v2 Gga-Mir-140-P2-v1 Gga-Mir-140-P2-v2 Gja-Mir-140-P2-v1 Gja-Mir-140-P2-v2 Gmo-Mir-140-P2-v1 Gmo-Mir-140-P2-v2 Hsa-Mir-140-P2-v1 Hsa-Mir-140-P2-v2 Lch-Mir-140-P2 Loc-Mir-140-P2-v1 Loc-Mir-140-P2-v2 Mal-Mir-140-P2-v1 Mal-Mir-140-P2-v2 Mdo-Mir-140-P2-v1 Mdo-Mir-140-P2-v2 Mml-Mir-140-P2-v1 Mml-Mir-140-P2-v2 Mmr-Mir-140-P2-v1 Mmr-Mir-140-P2-v2 Mmu-Mir-140-P2-v1 Mmu-Mir-140-P2-v2 Mun-Mir-140-P2-v1 Mun-Mir-140-P2-v2 Neu-Mir-140-P2-v1 Neu-Mir-140-P2-v2 Oan-Mir-140-P2-v1 Oan-Mir-140-P2-v2 Ocu-Mir-140-P2-v1 Ocu-Mir-140-P2-v2 Pab-Mir-140-P2-v1 Pab-Mir-140-P2-v2 Pma-Mir-140-o2 Rno-Mir-140-P2-v1 Rno-Mir-140-P2-v2 Sha-Mir-140-P2-v1 Sha-Mir-140-P2-v2 Spt-Mir-140-P2 Sto-Mir-140-P2-v1 Sto-Mir-140-P2-v2 Tni-Mir-140-P2-v1 Tni-Mir-140-P2-v2 Xla-Mir-140-P2a-v1 Xla-Mir-140-P2a-v2 Xla-Mir-140-P2b-v1 Xla-Mir-140-P2b-v2 Xtr-Mir-140-P2-v1 Xtr-Mir-140-P2-v2

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(TaeGut1_add)

11: 11586546-11586607 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-140-P2-v2)

Mir-140-P2-v1 11: 11586546-11586607 [+] UCSC Ensembl
Mir-140-P2-v2 11: 11586546-11586607 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GCUCCUGCUCCACCUCUCUCCGUGUCCUGCCAGUGGUUUUACCCUAUGGUAGGUUACGUCAUGCUGUUCUACCACAGGGUAGAACCACGGACAGGAUGCCGGGGCUGCCUCCACGUCUGAGG

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Structure

        10         20          30        40        50        60
GCUCCUGCUCCACCUCU-    -        -| A             A       UUACGU 
                  CUCC GUGUCCUG CC GUGGUUUUACCCU UGGUAGG      C
                  GGGG CGUAGGAC GG CACCAAGAUGGGA ACCAUCU      A
GGAGUCUGCACCUCCGUC    C        A^ -             C       UGUCGU 
120       110       100        90         80        70

Deep sequencing

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Fe	Fe	Fe	Fe	Ma	Ma	Ma	Ma

Star sequence

Tgu-Mir-140-P2-v2_5p*

mirBase accession

MIMAT0014557

Sequence

0- CAGUGGUUUUACCCUAUGGUAGG -23

Get sequence

Mature sequence

Tgu-Mir-140-P2-v2_3p

mirBase accession

MIMAT0014642

Sequence

39- UACCACAGGGUAGAACCACGGAC -62

Get sequence