MirGeneDB 3.0
MirGeneDB ID

Cpi-Mir-140-P2-v2

Family name MIR-140 (all species)
Seed ACCACAG
Species Western painted turtle (Chrysemys picta bellii)
MiRBase ID cpi-mir-140
Paralogues Cpi-Mir-140-P2-v1 
Orthologues Aca-Mir-140-P2-v1  Aca-Mir-140-P2-v2  Ami-Mir-140-P2-v1  Ami-Mir-140-P2-v2  Bta-Mir-140-P2-v1  Bta-Mir-140-P2-v2  Cfa-Mir-140-P2-v1  Cfa-Mir-140-P2-v2  Cja-Mir-140-P2-v1  Cja-Mir-140-P2-v2  Cli-Mir-140-P2-v1  Cli-Mir-140-P2-v2  Cmi-Mir-140-P2-v1  Cmi-Mir-140-P2-v2  Cpo-Mir-140-P2-v1  Cpo-Mir-140-P2-v2  Dno-Mir-140-P2-v1  Dno-Mir-140-P2-v2  Dre-Mir-140-P2-v1  Dre-Mir-140-P2-v2  Eca-Mir-140-P2-v1  Eca-Mir-140-P2-v2  Ete-Mir-140-P2-v1  Ete-Mir-140-P2-v2  Gga-Mir-140-P2-v1  Gga-Mir-140-P2-v2  Gja-Mir-140-P2-v1  Gja-Mir-140-P2-v2  Gmo-Mir-140-P2-v1  Gmo-Mir-140-P2-v2  Hsa-Mir-140-P2-v1  Hsa-Mir-140-P2-v2  Lch-Mir-140-P2  Loc-Mir-140-P2-v1  Loc-Mir-140-P2-v2  Mal-Mir-140-P2-v1  Mal-Mir-140-P2-v2  Mdo-Mir-140-P2-v1  Mdo-Mir-140-P2-v2  Mml-Mir-140-P2-v1  Mml-Mir-140-P2-v2  Mmr-Mir-140-P2-v1  Mmr-Mir-140-P2-v2  Mmu-Mir-140-P2-v1  Mmu-Mir-140-P2-v2  Mun-Mir-140-P2-v1  Mun-Mir-140-P2-v2  Neu-Mir-140-P2-v1  Neu-Mir-140-P2-v2  Oan-Mir-140-P2-v1  Oan-Mir-140-P2-v2  Ocu-Mir-140-P2-v1  Ocu-Mir-140-P2-v2  Pab-Mir-140-P2-v1  Pab-Mir-140-P2-v2  Pma-Mir-140-o2  Rno-Mir-140-P2-v1  Rno-Mir-140-P2-v2  Sha-Mir-140-P2-v1  Sha-Mir-140-P2-v2  Spt-Mir-140-P2  Sto-Mir-140-P2-v1  Sto-Mir-140-P2-v2  Tgu-Mir-140-P2-v1  Tgu-Mir-140-P2-v2  Tni-Mir-140-P2-v1  Tni-Mir-140-P2-v2  Xla-Mir-140-P2a-v1  Xla-Mir-140-P2a-v2  Xla-Mir-140-P2b-v1  Xla-Mir-140-P2b-v2  Xtr-Mir-140-P2-v1  Xtr-Mir-140-P2-v2 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(chrPic1)		 JH584945: 517644-517705 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-140-P2-v2)		 Mir-140-P2-v1 JH584945: 517644-517705 [-] UCSC Ensembl
Mir-140-P2-v2 JH584945: 517644-517705 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GCUCCUGCUCUGUCUCUCUCUGUGUCCUGCCAGUGGUUUUACCCUAUGGUAGGUUACGUCAUGCUGUUCUACCACAGGGUAGAACCACGGACAGGAUACCGGGCGCUCUCUGCGUUGGAGGA
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Structure
        10          20         30        40        50        60
GCUCCUGCUCUGUCUCU--   U        -| A             A       UUACGU 
                   CUC GUGUCCUG CC GUGGUUUUACCCU UGGUAGG      C
                   GGG CAUAGGAC GG CACCAAGAUGGGA ACCAUCU      A
AGGAGGUUGCGUCUCUCGC   C        A^ -             C       UGUCGU 
120       110       100        90         80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Te Te Te To
Star sequence

Cpi-Mir-140-P2-v2_5p*
mirBase accessionMIMAT0037764
Sequence 
0- CAGUGGUUUUACCCUAUGGUAGG -23
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Mature sequence

Cpi-Mir-140-P2-v2_3p
mirBase accessionMIMAT0037765
Sequence 
39- UACCACAGGGUAGAACCACGGAC -62
Get sequence