Mir-140-P2-v2

MirGeneDB ID

Rno-Mir-140-P2-v2

Family name

MIR-140 (all species)

Seed

ACCACAG

Species

Norway rat (Rattus norvegicus)

MiRBase ID

rno-mir-140

Paralogues

Rno-Mir-140-P2-v1

Orthologues

Aca-Mir-140-P2-v1 Aca-Mir-140-P2-v2 Ami-Mir-140-P2-v1 Ami-Mir-140-P2-v2 Bta-Mir-140-P2-v1 Bta-Mir-140-P2-v2 Cfa-Mir-140-P2-v1 Cfa-Mir-140-P2-v2 Cja-Mir-140-P2-v1 Cja-Mir-140-P2-v2 Cli-Mir-140-P2-v1 Cli-Mir-140-P2-v2 Cmi-Mir-140-P2-v1 Cmi-Mir-140-P2-v2 Cpi-Mir-140-P2-v1 Cpi-Mir-140-P2-v2 Cpo-Mir-140-P2-v1 Cpo-Mir-140-P2-v2 Dno-Mir-140-P2-v1 Dno-Mir-140-P2-v2 Dre-Mir-140-P2-v1 Dre-Mir-140-P2-v2 Eca-Mir-140-P2-v1 Eca-Mir-140-P2-v2 Ete-Mir-140-P2-v1 Ete-Mir-140-P2-v2 Gga-Mir-140-P2-v1 Gga-Mir-140-P2-v2 Gja-Mir-140-P2-v1 Gja-Mir-140-P2-v2 Gmo-Mir-140-P2-v1 Gmo-Mir-140-P2-v2 Hsa-Mir-140-P2-v1 Hsa-Mir-140-P2-v2 Lch-Mir-140-P2 Loc-Mir-140-P2-v1 Loc-Mir-140-P2-v2 Mal-Mir-140-P2-v1 Mal-Mir-140-P2-v2 Mdo-Mir-140-P2-v1 Mdo-Mir-140-P2-v2 Mml-Mir-140-P2-v1 Mml-Mir-140-P2-v2 Mmr-Mir-140-P2-v1 Mmr-Mir-140-P2-v2 Mmu-Mir-140-P2-v1 Mmu-Mir-140-P2-v2 Mun-Mir-140-P2-v1 Mun-Mir-140-P2-v2 Neu-Mir-140-P2-v1 Neu-Mir-140-P2-v2 Oan-Mir-140-P2-v1 Oan-Mir-140-P2-v2 Ocu-Mir-140-P2-v1 Ocu-Mir-140-P2-v2 Pab-Mir-140-P2-v1 Pab-Mir-140-P2-v2 Pma-Mir-140-o2 Sha-Mir-140-P2-v1 Sha-Mir-140-P2-v2 Spt-Mir-140-P2 Sto-Mir-140-P2-v1 Sto-Mir-140-P2-v2 Tgu-Mir-140-P2-v1 Tgu-Mir-140-P2-v2 Tni-Mir-140-P2-v1 Tni-Mir-140-P2-v2 Xla-Mir-140-P2a-v1 Xla-Mir-140-P2a-v2 Xla-Mir-140-P2b-v1 Xla-Mir-140-P2b-v2 Xtr-Mir-140-P2-v1 Xtr-Mir-140-P2-v2

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(rn6)

chr19: 39608972-39609033 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-140-P2-v2)

Mir-140-P2-v1 chr19: 39608972-39609033 [+] UCSC Ensembl
Mir-140-P2-v2 chr19: 39608972-39609033 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CCGCCCUGUGUGUCUCUCUCUGUGUCCUGCCAGUGGUUUUACCCUAUGGUAGGUUACAUCAUGCUGUUCUACCACAGGGUAGAACCACGGACAGGAUACUGGAGCACCCUCUGCAUCGAAGG

Get precursor sequence

Structure

        10         20          30        40        50        60
CCGCCCUGUGUGUCUCU-    -        -| A             A       UUACAU 
                  CUCU GUGUCCUG CC GUGGUUUUACCCU UGGUAGG      C
                  GAGG CAUAGGAC GG CACCAAGAUGGGA ACCAUCU      A
GGAAGCUACGUCUCCCAC    U        A^ -             C       UGUCGU 
120       110       100        90         80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Dr	Dr	Ad	Bi	Bi	Bi	Bi	Br	Br	Br	Br	Ce	Ce	Ce	Ce	Co	Co	Co	Co	Du	Du	Du	Du	Fa	He	He	He	Hi	Hi	Il	Il	Je	Je	Ki	Ki	Ki	Ki	Ki	La	Li	Li	Li	Li	Li	Li	Lu	Me	Me	Mu	Ov	Pa	Pa	Pa	Sk	Sm	So	So	So	So	Sp	St	St	St	St	Te	Te	Th	Ut	Wh

Star sequence

Rno-Mir-140-P2-v2_5p*

mirBase accession

MIMAT0000573

Sequence

0- CAGUGGUUUUACCCUAUGGUAGG -23

Get sequence

Proposed targets

microrna.org: MIMAT0000573
TargetScanVert: rno-miR-140-5p
miRDB: MIMAT0000573

Mature sequence

Rno-Mir-140-P2-v2_3p

mirBase accession

MIMAT0000574

Sequence

39- UACCACAGGGUAGAACCACGGAC -62

Get sequence

Proposed targets

microrna.org: MIMAT0000574
TargetScanVert: rno-miR-140-3p
miRDB: MIMAT0000574