Mir-140-P2-v2

MirGeneDB ID

Xtr-Mir-140-P2-v2

Family name

MIR-140 (all species)

Seed

ACCACAG

Species

Tropical clawed frog (Xenopus tropicalis)

MiRBase ID

xtr-mir-140

Paralogues

Xtr-Mir-140-P2-v1

Orthologues

Aca-Mir-140-P2-v1 Aca-Mir-140-P2-v2 Ami-Mir-140-P2-v1 Ami-Mir-140-P2-v2 Bta-Mir-140-P2-v1 Bta-Mir-140-P2-v2 Cfa-Mir-140-P2-v1 Cfa-Mir-140-P2-v2 Cja-Mir-140-P2-v1 Cja-Mir-140-P2-v2 Cli-Mir-140-P2-v1 Cli-Mir-140-P2-v2 Cmi-Mir-140-P2-v1 Cmi-Mir-140-P2-v2 Cpi-Mir-140-P2-v1 Cpi-Mir-140-P2-v2 Cpo-Mir-140-P2-v1 Cpo-Mir-140-P2-v2 Dno-Mir-140-P2-v1 Dno-Mir-140-P2-v2 Dre-Mir-140-P2-v1 Dre-Mir-140-P2-v2 Eca-Mir-140-P2-v1 Eca-Mir-140-P2-v2 Ete-Mir-140-P2-v1 Ete-Mir-140-P2-v2 Gga-Mir-140-P2-v1 Gga-Mir-140-P2-v2 Gja-Mir-140-P2-v1 Gja-Mir-140-P2-v2 Gmo-Mir-140-P2-v1 Gmo-Mir-140-P2-v2 Hsa-Mir-140-P2-v1 Hsa-Mir-140-P2-v2 Lch-Mir-140-P2 Loc-Mir-140-P2-v1 Loc-Mir-140-P2-v2 Mal-Mir-140-P2-v1 Mal-Mir-140-P2-v2 Mdo-Mir-140-P2-v1 Mdo-Mir-140-P2-v2 Mml-Mir-140-P2-v1 Mml-Mir-140-P2-v2 Mmr-Mir-140-P2-v1 Mmr-Mir-140-P2-v2 Mmu-Mir-140-P2-v1 Mmu-Mir-140-P2-v2 Mun-Mir-140-P2-v1 Mun-Mir-140-P2-v2 Neu-Mir-140-P2-v1 Neu-Mir-140-P2-v2 Oan-Mir-140-P2-v1 Oan-Mir-140-P2-v2 Ocu-Mir-140-P2-v1 Ocu-Mir-140-P2-v2 Pab-Mir-140-P2-v1 Pab-Mir-140-P2-v2 Pma-Mir-140-o2 Rno-Mir-140-P2-v1 Rno-Mir-140-P2-v2 Sha-Mir-140-P2-v1 Sha-Mir-140-P2-v2 Spt-Mir-140-P2 Sto-Mir-140-P2-v1 Sto-Mir-140-P2-v2 Tgu-Mir-140-P2-v1 Tgu-Mir-140-P2-v2 Tni-Mir-140-P2-v1 Tni-Mir-140-P2-v2 Xla-Mir-140-P2a-v1 Xla-Mir-140-P2a-v2 Xla-Mir-140-P2b-v1 Xla-Mir-140-P2b-v2

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(xenTro9_add)

chr4: 62459953-62460014 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-140-P2-v2)

Mir-140-P2-v1 chr4: 62459953-62460014 [+] UCSC Ensembl
Mir-140-P2-v2 chr4: 62459953-62460014 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GGCUGCUAUCUCUCCCUCUCUGUGUCCUCCCAGUGGUUUUACCCUAUGGUAGGUUACGUCAGGCUGUUCUACCACAGGGUAGAACCACGGACAGGAUACGGGGAGCUCUCAACAUGGAGCAG

Get precursor sequence

Structure

        10          20         30        40        50        60
GGCUGCUAUCUCUCCCU--           C-| A             A       UUACGU 
                   CUCUGUGUCCU  CC GUGGUUUUACCCU UGGUAGG      C
                   GGGGCAUAGGA  GG CACCAAGAUGGGA ACCAUCU      A
GACGAGGUACAACUCUCGA           CA^ -             C       UGUCGG 
120       110       100        90         80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

An	Br	Em	Em	He	Ve

Star sequence

Xtr-Mir-140-P2-v2_5p*

mirBase accession

MIMAT0003601

Sequence

0- CAGUGGUUUUACCCUAUGGUAGG -23

Get sequence

Proposed targets

TargetScanVert: xtr-miR-140

Mature sequence

Xtr-Mir-140-P2-v2_3p

mirBase accession

None

Sequence

39- UACCACAGGGUAGAACCACGGAC -62

Get sequence