Mir-140-P2-v2

MirGeneDB ID

Gga-Mir-140-P2-v2

Family name

MIR-140 (all species)

Seed

ACCACAG

Species

Chicken (Gallus gallus)

MiRBase ID

gga-mir-140

Paralogues

Gga-Mir-140-P2-v1

Orthologues

Aca-Mir-140-P2-v1 Aca-Mir-140-P2-v2 Ami-Mir-140-P2-v1 Ami-Mir-140-P2-v2 Bta-Mir-140-P2-v1 Bta-Mir-140-P2-v2 Cfa-Mir-140-P2-v1 Cfa-Mir-140-P2-v2 Cja-Mir-140-P2-v1 Cja-Mir-140-P2-v2 Cli-Mir-140-P2-v1 Cli-Mir-140-P2-v2 Cmi-Mir-140-P2-v1 Cmi-Mir-140-P2-v2 Cpi-Mir-140-P2-v1 Cpi-Mir-140-P2-v2 Cpo-Mir-140-P2-v1 Cpo-Mir-140-P2-v2 Dno-Mir-140-P2-v1 Dno-Mir-140-P2-v2 Dre-Mir-140-P2-v1 Dre-Mir-140-P2-v2 Eca-Mir-140-P2-v1 Eca-Mir-140-P2-v2 Ete-Mir-140-P2-v1 Ete-Mir-140-P2-v2 Gja-Mir-140-P2-v1 Gja-Mir-140-P2-v2 Gmo-Mir-140-P2-v1 Gmo-Mir-140-P2-v2 Hsa-Mir-140-P2-v1 Hsa-Mir-140-P2-v2 Lch-Mir-140-P2 Loc-Mir-140-P2-v1 Loc-Mir-140-P2-v2 Mal-Mir-140-P2-v1 Mal-Mir-140-P2-v2 Mdo-Mir-140-P2-v1 Mdo-Mir-140-P2-v2 Mml-Mir-140-P2-v1 Mml-Mir-140-P2-v2 Mmr-Mir-140-P2-v1 Mmr-Mir-140-P2-v2 Mmu-Mir-140-P2-v1 Mmu-Mir-140-P2-v2 Mun-Mir-140-P2-v1 Mun-Mir-140-P2-v2 Neu-Mir-140-P2-v1 Neu-Mir-140-P2-v2 Oan-Mir-140-P2-v1 Oan-Mir-140-P2-v2 Ocu-Mir-140-P2-v1 Ocu-Mir-140-P2-v2 Pab-Mir-140-P2-v1 Pab-Mir-140-P2-v2 Pma-Mir-140-o2 Rno-Mir-140-P2-v1 Rno-Mir-140-P2-v2 Sha-Mir-140-P2-v1 Sha-Mir-140-P2-v2 Spt-Mir-140-P2 Sto-Mir-140-P2-v1 Sto-Mir-140-P2-v2 Tgu-Mir-140-P2-v1 Tgu-Mir-140-P2-v2 Tni-Mir-140-P2-v1 Tni-Mir-140-P2-v2 Xla-Mir-140-P2a-v1 Xla-Mir-140-P2a-v2 Xla-Mir-140-P2b-v1 Xla-Mir-140-P2b-v2 Xtr-Mir-140-P2-v1 Xtr-Mir-140-P2-v2

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(Gallus_gallus.GRCg6a)

11: 19068678-19068739 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-140-P2-v2)

Mir-140-P2-v1 11: 19068678-19068739 [+] UCSC Ensembl
Mir-140-P2-v2 11: 19068678-19068739 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UCCUGCUGCCUGCGUCUCUCCGUGUCCUGCCAGUGGUUUUACCCUAUGGUAGGUUACGUCAUGCUGUUCUACCACAGGGUAGAACCACGGACGGGAUGCCGGGGCUGCCUCUGCGUCCGAGG

Get precursor sequence

Structure

        10         20          30        40        50        60
UCCUGCUGCCUGCGUCU-    -        -| A             A       UUACGU 
                  CUCC GUGUCCUG CC GUGGUUUUACCCU UGGUAGG      C
                  GGGG CGUAGGGC GG CACCAAGAUGGGA ACCAUCU      A
GGAGCCUGCGUCUCCGUC    C        A^ -             C       UGUCGU 
120       110       100        90         80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ad	Ad	Ad	Br	Br	Ce	Ce	Ce	Ce	Gg	He	He	Hy	Hy	Ki	Ki	Li	Li	Lu	Lu	Ov	Pr	Pr	Sc	Sc	Sp	Sp	Te

Star sequence

Gga-Mir-140-P2-v2_5p*

mirBase accession

MIMAT0001159

Sequence

0- CAGUGGUUUUACCCUAUGGUAGG -23

Get sequence

Proposed targets

TargetScanVert: gga-miR-140-5p
miRDB: MIMAT0001159

Mature sequence

Gga-Mir-140-P2-v2_3p

mirBase accession

MIMAT0003722

Sequence

39- UACCACAGGGUAGAACCACGGAC -62

Get sequence

Proposed targets

TargetScanVert: gga-miR-140-3p
miRDB: MIMAT0003722