Mir-140-P2-v1

MirGeneDB ID

Tni-Mir-140-P2-v1

Family name

MIR-140 (all species)

Seed

CCACAGG

Species

Pufferfish (Tetraodon nigroviridis)

MiRBase ID

tni-mir-140

Paralogues

Tni-Mir-140-P2-v2

Orthologues

Aca-Mir-140-P2-v1 Aca-Mir-140-P2-v2 Ami-Mir-140-P2-v1 Ami-Mir-140-P2-v2 Bta-Mir-140-P2-v1 Bta-Mir-140-P2-v2 Cfa-Mir-140-P2-v1 Cfa-Mir-140-P2-v2 Cja-Mir-140-P2-v1 Cja-Mir-140-P2-v2 Cli-Mir-140-P2-v1 Cli-Mir-140-P2-v2 Cmi-Mir-140-P2-v1 Cmi-Mir-140-P2-v2 Cpi-Mir-140-P2-v1 Cpi-Mir-140-P2-v2 Cpo-Mir-140-P2-v1 Cpo-Mir-140-P2-v2 Dno-Mir-140-P2-v1 Dno-Mir-140-P2-v2 Dre-Mir-140-P2-v1 Dre-Mir-140-P2-v2 Eca-Mir-140-P2-v1 Eca-Mir-140-P2-v2 Ete-Mir-140-P2-v1 Ete-Mir-140-P2-v2 Gga-Mir-140-P2-v1 Gga-Mir-140-P2-v2 Gja-Mir-140-P2-v1 Gja-Mir-140-P2-v2 Gmo-Mir-140-P2-v1 Gmo-Mir-140-P2-v2 Hsa-Mir-140-P2-v1 Hsa-Mir-140-P2-v2 Lch-Mir-140-P2 Loc-Mir-140-P2-v1 Loc-Mir-140-P2-v2 Mal-Mir-140-P2-v1 Mal-Mir-140-P2-v2 Mdo-Mir-140-P2-v1 Mdo-Mir-140-P2-v2 Mml-Mir-140-P2-v1 Mml-Mir-140-P2-v2 Mmr-Mir-140-P2-v1 Mmr-Mir-140-P2-v2 Mmu-Mir-140-P2-v1 Mmu-Mir-140-P2-v2 Mun-Mir-140-P2-v1 Mun-Mir-140-P2-v2 Neu-Mir-140-P2-v1 Neu-Mir-140-P2-v2 Oan-Mir-140-P2-v1 Oan-Mir-140-P2-v2 Ocu-Mir-140-P2-v1 Ocu-Mir-140-P2-v2 Pab-Mir-140-P2-v1 Pab-Mir-140-P2-v2 Pma-Mir-140-o2 Rno-Mir-140-P2-v1 Rno-Mir-140-P2-v2 Sha-Mir-140-P2-v1 Sha-Mir-140-P2-v2 Spt-Mir-140-P2 Sto-Mir-140-P2-v1 Sto-Mir-140-P2-v2 Tgu-Mir-140-P2-v1 Tgu-Mir-140-P2-v2 Xla-Mir-140-P2a-v1 Xla-Mir-140-P2a-v2 Xla-Mir-140-P2b-v1 Xla-Mir-140-P2b-v2 Xtr-Mir-140-P2-v1 Xtr-Mir-140-P2-v2

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)

13: 1172500-1172561 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-140-P2-v1)

Mir-140-P2-v1 13: 1172500-1172561 [+] UCSC Ensembl
Mir-140-P2-v2 13: 1172500-1172561 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CGCAUUGUGUCUCUGUCUCUGGUGUCACGUCAGUGGUUUUACCCUAUGGUAGGUGACAUCAUGCUGUUCUACCACAGGGUAGAACCACGGACGGGAUGUCGGAGGGUGUCUGCGUCCAUGCG

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Structure

        10          20        30        40        50        60
CGCAUUGUGUCUCUGUC--|    UG  A    A             A      GUGACAU 
                   UCUGG  UC CGUC GUGGUUUUACCCU UGGUAG       C
                   AGGCU  AG GCAG CACCAAGAUGGGA ACCAUC       A
GCGUACCUGCGUCUGUGGG^    GU  G    G             C      UUGUCGU 
120       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Sp	Sp	Sp	To

Star sequence

Tni-Mir-140-P2-v1_5p*

mirBase accession

MIMAT0003025

Sequence

0- CAGUGGUUUUACCCUAUGGUAG -22

Get sequence

Mature sequence

Tni-Mir-140-P2-v1_3p

mirBase accession

None

Sequence

40- ACCACAGGGUAGAACCACGGAC -62

Get sequence