| MirGeneDB ID | Pab-Mir-320-P3 |
|---|---|
| Family name | MIR-320 (all species) |
| Seed | AAAGCUG |
| Species | Sumatran orangutan (Pongo abelii) |
| MiRBase ID | |
| Paralogues | Pab-Mir-320-P1 Pab-Mir-320-P2a Pab-Mir-320-P2b Pab-Mir-320-P4 |
| Orthologues | Cfa-Mir-320 Cpo-Mir-320 Dno-Mir-320 Eca-Mir-320 Ete-Mir-320 Hsa-Mir-320-P3 Laf-Mir-320 Mml-Mir-320-P3 Mmu-Mir-320 Ocu-Mir-320 Rno-Mir-320 |
| Node of Origin (locus) | Catarrhini |
| Node of Origin (family) | Eutheria |
| Genome context (GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054696.2: 35882870-35882923 [+] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | AAGGAAAAUGUGUUUUGCAUUAAAAAUGAGGCCUUGUCUUCCCACUUCUUCCCAGAGUCAGGAAAAGCUGGGUUGAGAGGGUAGAAAAAAAAUGAUGUACGUGAAUAACUACUGGet precursor sequence |
| Structure | 10 20 30 40 50 AAGGAAAAUGUGUUUUG---| AAAAAUGAG G UU - C CAG CAUU GCCUU UC CCCA CUU UUCC A GUAA UGGGA AG GGGU GAA AAGG G GUCAUCAAUAAGUGCAUGUA^ AAAAAAGA- G UU C - ACU 110 100 90 80 70 60 |
| Deep sequencing | |
| Comment | As a non-canonical (Group 3, Kim et al. 2016) Drosha-independent 5' capped miRNA few star reads are cloned and sequenced. |
| 3' NTU | Unknown |
| Motifs | No |
| Star sequence | Pab-Mir-320-P3_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- GCCUUGUCUUCCCACUUCUUCC -22
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|
| Mature sequence | Pab-Mir-320-P3_3p |
| mirBase accession | None |
| Sequence |
32- AAAAGCUGGGUUGAGAGGGUAG -54
Get sequence
|
