MirGeneDB 3.0
MirGeneDB ID

Pab-Mir-320-P1

Family name MIR-320 (all species)
Seed AAAGCUG
Species Sumatran orangutan (Pongo abelii)
MiRBase ID
Paralogues Pab-Mir-320-P2a  Pab-Mir-320-P2b  Pab-Mir-320-P3  Pab-Mir-320-P4 
Orthologues Bta-Mir-320-P1c  Bta-Mir-320-P1d  Cfa-Mir-320  Cja-Mir-320-P1  Cpo-Mir-320  Dno-Mir-320  Eca-Mir-320  Ete-Mir-320  Hsa-Mir-320-P1  Laf-Mir-320  Mml-Mir-320-P1  Mmr-Mir-320-P1a  Mmr-Mir-320-P1b  Mmr-Mir-320-P1c  Mmr-Mir-320-P1d  Mmu-Mir-320  Ocu-Mir-320  Rno-Mir-320 
Node of Origin (locus) Primates
Node of Origin (family) Eutheria
Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces)		 CM054686.2: 24059316-24059369 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UAUUUAUCAGGCGGCGCUUCGCUCCCCUCCGCCUUCUCUUCCCGGUUCUUCCCGGAGUCGGGAAAAGCUGGGUUGAGAGGGCGAAAAAGGAUGAGGUGACUGGUCUGGGCUACG
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Structure
        10          20         30        40        50      
UAUUUAUCAGGCGGCGC--|   C   CCUC-         UU       C    CGG 
                   UUCG UCC     CGCCUUCUC  CCCGGUU UUCC   A
                   GAGU AGG     GCGGGAGAG  GGGUCGA AAGG   G
GCAUCGGGUCUGGUCAGUG^   -   AAAAA         UU       A    GCU 
  110       100         90        80        70        60
Deep sequencing
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CommentAs a non-canonical (Group 3, Kim et al. 2016) Drosha-independent 5' capped miRNA few star reads are cloned and sequenced.
3' NTU No
MotifsNo
Tissue expression
-   +
Br Br Li Li
Star sequence

Pab-Mir-320-P1_5p* (predicted)
mirBase accessionNone
Sequence 
0- GCCUUCUCUUCCCGGUUCUUCC -22
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Mature sequence

Pab-Mir-320-P1_3p
mirBase accessionNone
Sequence 
32- AAAAGCUGGGUUGAGAGGGCGA -54
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