MirGeneDB ID | Eca-Mir-320 |
Family name |
MIR-320 (all species) |
Seed |
AAAGCUG |
Species |
Horse (Equus caballus) |
MiRBase ID |
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Paralogues |
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Orthologues |
Bta-Mir-320-P1c
Bta-Mir-320-P1d
Cfa-Mir-320
Cja-Mir-320-P1
Cpo-Mir-320
Dno-Mir-320
Ete-Mir-320
Hsa-Mir-320-P1
Hsa-Mir-320-P2a
Hsa-Mir-320-P2b
Hsa-Mir-320-P3
Hsa-Mir-320-P4
Laf-Mir-320
Mml-Mir-320-P1
Mml-Mir-320-P2a
Mml-Mir-320-P2b
Mml-Mir-320-P3
Mml-Mir-320-P4
Mmr-Mir-320-P1a
Mmr-Mir-320-P1b
Mmr-Mir-320-P1c
Mmr-Mir-320-P1d
Mmr-Mir-320-P5
Mmr-Mir-320-P6
Mmr-Mir-320-P7
Mmr-Mir-320-P8
Mmu-Mir-320
Ocu-Mir-320
Pab-Mir-320-P1
Pab-Mir-320-P2a
Pab-Mir-320-P2b
Pab-Mir-320-P3
Pab-Mir-320-P4
Rno-Mir-320
|
Node of Origin (locus) |
Eutheria
|
Node of Origin (family) |
Eutheria
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Genome context (GCA_002863925.1_EquCab3.0) |
CM009149.1: 51365772-51365825 [-]
UCSC
Ensembl
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Precursor (pre-Mir +30nt flank) |
UAUUUAUCCGGCGGCGCCGCGCGGCCCUCCGCCUUCUCUUCCCGGUUCUUCCCGGAGUCGGGAAAAGCUGGGUUGAGAGGGCGAAAAAGGAAGCGGGCGCUGUCUGGGUUCCGC
Get precursor sequence
|
Structure | 10 20 30 40 50
UAUUUAUCCGGCGGCGCCG GG CUC--| UU C CGG
CGC CC CGCCUUCUC CCCGGUU UUCC A
GCG GG GCGGGAGAG GGGUCGA AAGG G
CGCCUUGGGUCUGUCGCGG AA AAAAA^ UU A GCU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
Comment | As a non-canonical (Group 3, Kim et al. 2016) Drosha-independent 5' capped miRNA few star reads are cloned and sequenced. |
3' NTU |
No
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Motifs | No |
Tissue expression
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Ps |
Bo |
Ca |
Em |
En |
En |
En |
En |
En |
En |
En |
Gl |
He |
He |
Ho |
Im |
Ki |
Li |
Lo |
Lu |
Ma |
Ma |
Mi |
Pl |
Sp |
Te |
Tr |
Ut |
Ut |
Yo |
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Star sequence |
Eca-Mir-320_5p* |
mirBase accession | None |
Sequence |
0- GCCUUCUCUUCCCGGUUCUUCC -22
Get sequence
|
Mature sequence |
Eca-Mir-320_3p |
mirBase accession | None |
Sequence |
32- AAAAGCUGGGUUGAGAGGGCGA -54
Get sequence
|