MirGeneDB 3.0
MirGeneDB ID

Pab-Mir-320-P4

Family name MIR-320 (all species)
Seed AAAGCUG
Species Sumatran orangutan (Pongo abelii)
MiRBase ID
Paralogues Pab-Mir-320-P1  Pab-Mir-320-P2a  Pab-Mir-320-P2b  Pab-Mir-320-P3 
Orthologues Cfa-Mir-320  Cpo-Mir-320  Dno-Mir-320  Eca-Mir-320  Ete-Mir-320  Hsa-Mir-320-P4  Laf-Mir-320  Mml-Mir-320-P4  Mmu-Mir-320  Ocu-Mir-320  Rno-Mir-320 
Node of Origin (locus) Catarrhini
Node of Origin (family) Eutheria
Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces)		 CM054696.2: 38534660-38534713 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGGGUAUGUACGAAUAAAAUGGCAUGACAGGCCUUCUCUUUCCAGUUCUUUCCAGAAUUGGGAAAAGCUGGGUUGAGAGGGUAAGAAAAGAAAAACAAAUAAAUUUUUUAAAAA
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Structure
        10        20        30          40        50      
UGGGUAUGUACGAAUAAAAUGGCAUGACAG--|       UU       C    CAG 
                                GCCUUCUC  UCCAGUU UUUC   A
                                UGGGAGAG  GGGUCGA AAGG   A
AAAAAUUUUUUAAAUAAACAAAAAGAAAAGAA^       UU       A    GUU 
  110       100        90        80        70        60
Deep sequencing
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CommentAs a non-canonical (Group 3, Kim et al. 2016) Drosha-independent 5' capped miRNA few star reads are cloned and sequenced.
3' NTU No
MotifsNo
Tissue expression
-   +
Br Br Li Li
Star sequence

Pab-Mir-320-P4_5p* (predicted)
mirBase accessionNone
Sequence 
0- GCCUUCUCUUUCCAGUUCUUUC -22
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Mature sequence

Pab-Mir-320-P4_3p
mirBase accessionNone
Sequence 
32- AAAAGCUGGGUUGAGAGGGUAA -54
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