MirGeneDB ID | Cpo-Mir-320 |
Family name |
MIR-320 (all species) |
Seed |
AAAGCUG |
Species |
Guinea pig (Cavia porcellus) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Bta-Mir-320-P1a
Bta-Mir-320-P1b
Cfa-Mir-320
Dno-Mir-320
Ete-Mir-320
Hsa-Mir-320-P1
Hsa-Mir-320-P2a
Hsa-Mir-320-P2b
Hsa-Mir-320-P3
Hsa-Mir-320-P4
Mml-Mir-320-P1
Mml-Mir-320-P2a
Mml-Mir-320-P2b
Mml-Mir-320-P3
Mml-Mir-320-P4
Mmu-Mir-320
Ocu-Mir-320
Rno-Mir-320
|
Node of Origin (locus) |
Eutheria
|
Node of Origin (family) |
Eutheria
|
Genome context (cavPor3) |
scaffold_1: 59045827-59045880 [-]
UCSC
|
Precursor (pre-Mir +30nt flank) |
UAUUUAUUAGGCGGCGCUUCGCUGCCCUCCGCCUUCUCUUCCCGGUUCUUCCCGGAGUCGGGAAAAGCUGGGUUGAGAGGGCGAAAAAAGGUGAGAUGGAGGAGGGUCUUUGCC
Get precursor sequence
|
Structure | 10 20 30 40 50
UAUUUAUUAGGCGGCGC--| GCCCUC UU C CGG
UUCGCU CGCCUUCUC CCCGGUU UUCC A
GAGUGG GCGGGAGAG GGGUCGA AAGG G
CCGUUUCUGGGAGGAGGUA^ AAAAAA UU A GCU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
Comment | As a non-canonical (Group 3, Kim et al. 2016) Drosha-independent 5' capped miRNA few star reads are cloned and sequenced. |
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Star sequence |
Cpo-Mir-320_5p* (predicted) |
mirBase accession | None |
Sequence |
0- GCCUUCUCUUCCCGGUUCUUCC -22
Get sequence
|
Mature sequence |
Cpo-Mir-320_3p |
mirBase accession | None |
Sequence |
32- AAAAGCUGGGUUGAGAGGGCGA -54
Get sequence
|