| MirGeneDB ID | Laf-Mir-320 |
|---|---|
| Family name | MIR-320 (all species) |
| Seed | AAAGCUG |
| Species | African bush elephant (Loxodonta africana) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Bta-Mir-320-P1c Bta-Mir-320-P1d Cfa-Mir-320 Cja-Mir-320-P1 Cpo-Mir-320 Dno-Mir-320 Eca-Mir-320 Ete-Mir-320 Hsa-Mir-320-P1 Hsa-Mir-320-P2a Hsa-Mir-320-P2b Hsa-Mir-320-P3 Hsa-Mir-320-P4 Mml-Mir-320-P1 Mml-Mir-320-P2a Mml-Mir-320-P2b Mml-Mir-320-P3 Mml-Mir-320-P4 Mmr-Mir-320-P1a Mmr-Mir-320-P1b Mmr-Mir-320-P1c Mmr-Mir-320-P1d Mmr-Mir-320-P5 Mmr-Mir-320-P6 Mmr-Mir-320-P7 Mmr-Mir-320-P8 Mmu-Mir-320 Ocu-Mir-320 Pab-Mir-320-P1 Pab-Mir-320-P2a Pab-Mir-320-P2b Pab-Mir-320-P3 Pab-Mir-320-P4 Rno-Mir-320 |
| Node of Origin (locus) | Eutheria |
| Node of Origin (family) | Eutheria |
| Genome context (GCA_000001905.1_Loxafr3.0) |
GL010049.1: 14355599-14355650 [+] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | AUUUAUCAAGCGGCACCUCGCUCCCCUCCGCCUUCUCUUCCCGGUUCUUCCCGGAGUCGGGAAAAGCUGGGUUGAGAGGGCGAAAAAGGAUGAGAGGACGGGUCUGGGUUACGet precursor sequence |
| Structure | 10 20 30 40 50 AUUUAUCAAGCGGCACCUCG C- C---| UU C CGG CUC CCU CGCCUUCUC CCCGGUU UUCC A GAG GGA GCGGGAGAG GGGUCGA AAGG G CAUUGGGUCUGGGCAGGA-- UA AAAA^ UU A GCU 110 100 90 80 70 60 |
| Deep sequencing | |
| Comment | As a Group 3 (Kim et al. 2016) Drosha-independent 5' capped miRNA few star reads are cloned and sequenced. |
| 3' NTU | No |
| Motifs | No |
| Star sequence | Laf-Mir-320_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- CCUUCUCUUCCCGGUUCUUCC -21
Get sequence
|
| Mature sequence | Laf-Mir-320_3p |
| mirBase accession | None |
| Sequence |
31- AAAAGCUGGGUUGAGAGGGCG -52
Get sequence
|
