| MirGeneDB ID | Cja-Mir-320-P1 |
|---|---|
| Family name | MIR-320 (all species) |
| Seed | AAAGCUG |
| Species | White-tufted-ear marmoset (Callithrix jacchus) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Bta-Mir-320-P1c Bta-Mir-320-P1d Cfa-Mir-320 Cpo-Mir-320 Dno-Mir-320 Eca-Mir-320 Ete-Mir-320 Hsa-Mir-320-P1 Laf-Mir-320 Mml-Mir-320-P1 Mmr-Mir-320-P1a Mmr-Mir-320-P1b Mmr-Mir-320-P1c Mmr-Mir-320-P1d Mmu-Mir-320 Ocu-Mir-320 Pab-Mir-320-P1 Rno-Mir-320 |
| Node of Origin (locus) | Catarrhini |
| Node of Origin (family) | Eutheria |
| Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021927.1: 16121062-16121115 [+] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | UAUUUAUUAGGCGGCGCUUCGCUCCCCUCCGCCUUCUCUUCCCGGUUCUUCCCGGAGUCGGGAAAAGCUGGGUUGAGAGGGCGAAAAAGAAUAAGGGGAUGGUUCUGGGCUACGGet precursor sequence |
| Structure | 10 20 30 40 50 UAUUUAUUAGGCGGCGCUUCGCUCCCCUC--| UU C CGG CGCCUUCUC CCCGGUU UUCC A GCGGGAGAG GGGUCGA AAGG G GCAUCGGGUCUUGGUAGGGGAAUAAGAAAAA^ UU A GCU 110 100 90 80 70 60 |
| Deep sequencing | |
| Comment | As a non-canonical (Group 3, Kim et al. 2016) Drosha-independent 5' capped miRNA few star reads are cloned and sequenced. |
| 3' NTU | Yes |
| Motifs | No |
| Star sequence | Cja-Mir-320-P1_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- GCCUUCUCUUCCCGGUUCUUCC -22
Get sequence
|
| Mature sequence | Cja-Mir-320-P1_3p |
| mirBase accession | None |
| Sequence |
32- AAAAGCUGGGUUGAGAGGGCGA -54
Get sequence
|
