MirGeneDB ID | Cja-Mir-320-P1 |
Family name |
MIR-320 (all species) |
Seed |
AAAGCUG |
Species |
White-tufted-ear marmoset (Callithrix jacchus) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Bta-Mir-320-P1c
Bta-Mir-320-P1d
Cfa-Mir-320
Cpo-Mir-320
Dno-Mir-320
Eca-Mir-320
Ete-Mir-320
Hsa-Mir-320-P1
Laf-Mir-320
Mml-Mir-320-P1
Mmr-Mir-320-P1a
Mmr-Mir-320-P1b
Mmr-Mir-320-P1c
Mmr-Mir-320-P1d
Mmu-Mir-320
Ocu-Mir-320
Pab-Mir-320-P1
Rno-Mir-320
|
Node of Origin (locus) |
Catarrhini
|
Node of Origin (family) |
Eutheria
|
Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021927.1: 16121062-16121115 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UAUUUAUUAGGCGGCGCUUCGCUCCCCUCCGCCUUCUCUUCCCGGUUCUUCCCGGAGUCGGGAAAAGCUGGGUUGAGAGGGCGAAAAAGAAUAAGGGGAUGGUUCUGGGCUACG
Get precursor sequence
|
Structure | 10 20 30 40 50
UAUUUAUUAGGCGGCGCUUCGCUCCCCUC--| UU C CGG
CGCCUUCUC CCCGGUU UUCC A
GCGGGAGAG GGGUCGA AAGG G
GCAUCGGGUCUUGGUAGGGGAAUAAGAAAAA^ UU A GCU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
Comment | As a non-canonical (Group 3, Kim et al. 2016) Drosha-independent 5' capped miRNA few star reads are cloned and sequenced. |
3' NTU |
Yes
|
Motifs | No |
Tissue expression
|
|
Star sequence |
Cja-Mir-320-P1_5p* (predicted) |
mirBase accession | None |
Sequence |
0- GCCUUCUCUUCCCGGUUCUUCC -22
Get sequence
|
Mature sequence |
Cja-Mir-320-P1_3p |
mirBase accession | None |
Sequence |
32- AAAAGCUGGGUUGAGAGGGCGA -54
Get sequence
|