MirGeneDB ID | Mmr-Mir-320-P1b |
Family name |
MIR-320 (all species) |
Seed |
AAAGCUG |
Species |
Gray mouse lemur (Microcebus murinus) |
MiRBase ID |
mmr-mir-320a-2
|
Paralogues |
Mmr-Mir-320-P1a
Mmr-Mir-320-P1c
Mmr-Mir-320-P1d
Mmr-Mir-320-P5
Mmr-Mir-320-P6
Mmr-Mir-320-P7
Mmr-Mir-320-P8
|
Orthologues |
Cfa-Mir-320
Cja-Mir-320-P1
Cpo-Mir-320
Dno-Mir-320
Eca-Mir-320
Ete-Mir-320
Hsa-Mir-320-P1
Laf-Mir-320
Mml-Mir-320-P1
Mmu-Mir-320
Ocu-Mir-320
Pab-Mir-320-P1
Rno-Mir-320
|
Node of Origin (locus) |
M. murinus
|
Node of Origin (family) |
Eutheria
|
Genome context (GCA_000165445.3_Mmur_3.0_genomic) |
CM007680.1: 21141264-21141317 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UAUUUAUCAGGCGGCGCCUCACUCCCCUCCGCCUUCUCUUCCCGGUUCUUCCCGGAGUCGGGAAAAGCUGGGUUGAGAGGGCGAAAAAGGAUGAGGGGAGCGGUCUAGGGUACG
Get precursor sequence
|
Structure | 10 20 30 40 50
UAUUUAUCAGGCGGCGC--| C CCUC- UU C CGG
CUCA UCC CGCCUUCUC CCCGGUU UUCC A
GAGU AGG GCGGGAGAG GGGUCGA AAGG G
GCAUGGGAUCUGGCGAGGG^ - AAAAA UU A GCU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
Comment | As a non-canonical (Group 3, Kim et al. 2016) Drosha-independent 5' capped miRNA few star reads are cloned and sequenced. |
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Star sequence |
Mmr-Mir-320-P1b_5p* |
mirBase accession | None |
Sequence |
0- GCCUUCUCUUCCCGGUUCUUCC -22
Get sequence
|
Mature sequence |
Mmr-Mir-320-P1b_3p |
mirBase accession | MIMAT0049150 |
Sequence |
32- AAAAGCUGGGUUGAGAGGGCGA -54
Get sequence
|