| MirGeneDB ID | Bta-Mir-320-P1c |
|---|---|
| Family name | MIR-320 (all species) |
| Seed | AAAGCUG |
| Species | Cow (Bos taurus) |
| MiRBase ID | bta-mir-320a-1 |
| Paralogues | Bta-Mir-320-P1d |
| Orthologues | Cfa-Mir-320 Cja-Mir-320-P1 Cpo-Mir-320 Dno-Mir-320 Eca-Mir-320 Ete-Mir-320 Hsa-Mir-320-P1 Laf-Mir-320 Mml-Mir-320-P1 Mmr-Mir-320-P1c Mmu-Mir-320 Ocu-Mir-320 Pab-Mir-320-P1 Rno-Mir-320 |
| Node of Origin (locus) | B. taurus |
| Node of Origin (family) | Eutheria |
| Genome context (GCF_002263795.1_ARS-UCD1.2_BTA) |
NC_037347.1: 15245811-15245864 [+] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | AUAAAUUAAUUCUUUAAAAACGAAAAAGAGGCCUUCUCUUCCCGGUUCUUCCCGGAGUCGGGAAAAGCUGGGUUGAGAGGGCGAAAAAGGAAGAGGGGAAGGGUCUAGGGGAGGGet precursor sequence |
| Structure | 10 20 30 40 50 AUAAAUUAAUUCUUUAAAAACGAAAAAGAG--| UU C CGG GCCUUCUC CCCGGUU UUCC A CGGGAGAG GGGUCGA AAGG G GGAGGGGAUCUGGGAAGGGGAGAAGGAAAAAG^ UU A GCU 110 100 90 80 70 60 |
| Deep sequencing | |
| Comment | As a non-canonical (Group 3, Kim et al. 2016) Drosha-independent 5' capped miRNA few star reads are cloned and sequenced. |
| 3' NTU | No |
| Motifs | No |
| Star sequence | Bta-Mir-320-P1c_5p* |
| mirBase accession | None |
| Sequence |
0- GCCUUCUCUUCCCGGUUCUUCC -22
Get sequence
|
| Mature sequence | Bta-Mir-320-P1c_3p |
| mirBase accession | MIMAT0003534 |
| Sequence |
32- AAAAGCUGGGUUGAGAGGGCGA -54
Get sequence
|
| Proposed targets |
TargetScanVert: bta-miR-320a |
