Mir-383-v2

MirGeneDB ID

Sha-Mir-383-v2

Family name

MIR-383 (all species)

Seed

AGAUCAG

Species

Tasmanian devil (Sarcophilus harrisii)

MiRBase ID

sha-mir-383

Paralogues

Sha-Mir-383-v1

Orthologues

Aca-Mir-383-v2 Ami-Mir-383-v2 Bta-Mir-383-v2 Cfa-Mir-383-v2 Cja-Mir-383-v2 Cli-Mir-383-v2 Cpi-Mir-383-v2 Cpo-Mir-383-v2 Dno-Mir-383-v2 Eca-Mir-383-v2 Ete-Mir-383-v2 Gga-Mir-383-v2 Gja-Mir-383-v2 Hsa-Mir-383-v2 Laf-Mir-383-v2 Mdo-Mir-383-v2 Mml-Mir-383-v2 Mmr-Mir-383-v2 Mmu-Mir-383-v2 Mun-Mir-383 Oan-Mir-383-v2 Ocu-Mir-383-v2 Pab-Mir-383-v2 Pbv-Mir-383-v2 Rno-Mir-383-v2 Spt-Mir-383 Tgu-Mir-383-v2 Xtr-Mir-383-v2

Node of Origin (locus)

Tetrapoda

Node of Origin (family)

Tetrapoda

Genome context
(DEVIL_add)

GL864737.1: 2362166-2362228 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-383-v2)

Mir-383-v2 GL864737.1: 2362166-2362228 [+] UCSC Ensembl
Mir-383-v1 GL864737.1: 2362167-2362228 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

ACAGCAGAAGCUCCAAAGUCACCUGCUCCUCAGAUCAGAAGGUGAUUGUGGCUUUGGGCAGACAUGGAACAGCCACAUCACUGGCUGGUCAGAAAGAGCAAGUGUCCUAGCCUUGGGCCUCAC

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Structure

        10        20         30        40        50        60  
ACAGCAGAAGCUCCAAAGU   C     C-| A      AA      U      UUGGGCAG 
                   CAC UGCUC  UC GAUCAG  GGUGAU GUGGCU        \
                   GUG ACGAG  AG CUGGUC  UCACUA CACCGA        A
CACUCCGGGUUCCGAUCCU   A     AA^ A      GG      -      CAAGGUAC 
 120       110       100        90        80         70

Deep sequencing

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Comment

There are not enough 3p reads to reliably assess whether this is a Group 2 miRNA, but this version is a Group 2 in other taxa where it can be assessed.

3' NTU

Unknown

Motifs

Tissue expression

Bo	Br	He	Ki	Li	Ly	Pa	Sk	Sp	Te

Mature sequence

Sha-Mir-383-v2_5p

mirBase accession

MIMAT0022829

Sequence

0- CAGAUCAGAAGGUGAUUGUGGCU -23

Get sequence

Star sequence

Sha-Mir-383-v2_3p*

mirBase accession

None

Sequence

42- CCACAUCACUGGCUGGUCAGA -63

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